Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0764 ATGGCTTCGTTATTCAAGGATTTGTCGAAGCTTTCAGCATATAGAGATAGAAGGTTCCCCGGAAACCAAGAAGAATTCGAGCACGCGCTTCTGACATCTACAACTGTTTATGTTGGAAACATGTCGTTTTACACAACAGAGGAGCAAGTTTATGAGTTGTTTTCAAGAGCTGGAGAAATTAAGAAGATCATTATGGGTTTGGATAAGAATACTAAAACACCCTGTGGTTTCTGTTTTGTTTTGTATTACTCGCGCGAAGATACCGAGGATGCTTGCAAATACATAAGCGGGACAATACTGGACGACCGCCCTATTCGTGTTGATTTTGATTGGGGATTCCAGGAAGGCAGACAATGGGGTCGCGGTCGTAGTGGCGGCCAGGTTCGTGATGAATATCGCACTGATTATGATCCTGATATCCTTTTAATGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGCTCTTTTCCACCAGTTGTTCCAAGTTCCTATGGTAGACATGGTGGAGGCCATGGCCATGGTGGTAACTATCGTCATGGTAGAGATTACCATAGGAAGAGACAGAGAGATGATGATCGCCACCGCACACAAGAGTCCTCAAAAAGAACATTGGATCATGAATCTCGTAGGAACTCTGATCATGAGTCTAGACCGGAAAAAAATCCACGGTTTCGAGAGAGTGGTGATTCGGATGATGACGAGGAAGATGATAGGAAACGACGGGCTTAA 750 0.44 MASLFKDLSKLSAYRDRRFPGNQEEFEHALLTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPDILLMKELEVQRQLVDYGAGSLGSFPPVVPSSYGRHGGGHGHGGNYRHGRDYHRKRQRDDDRHRTQESSKRTLDHESRRNSDHESRPEKNPRFRESGDSDDDEEDDRKRRA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0764 249 CDD RRM_NCBP2 36 113 IPR034148 -
Lal8g0764 249 MobiDBLite consensus disorder prediction 191 249 - -
Lal8g0764 249 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 204 - -
Lal8g0764 249 SUPERFAMILY RNA-binding domain, RBD 24 137 IPR035979 GO:0003676
Lal8g0764 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Lal8g0764 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Lal8g0764 249 MobiDBLite consensus disorder prediction 166 249 - -
Lal8g0764 249 Gene3D - 6 140 IPR012677 -
Lal8g0764 249 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 204 IPR027157 GO:0000339|GO:0005846|GO:0045292
Lal8g0764 249 SMART rrm1_1 35 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0764 Lal-Chr8 5474232 5478634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0764 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 8.20e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0764 K12883 - gmx:100789535 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0764 8 5474232 5478634 Lal8g0764 8 5474232 5478634 ECH
Lal10g0679 10 14559004 14564174 Lal8g0764 8 5474232 5478634 LSH