Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0750 ATGGGTTTCTTTGATGAACTACAAGCTCCTCACTCAACCTCAAACCCCAATAACATGGGTCACAATGACTTCAATAAAAAGATATTGCTTGCGGCCATAGTTTTCTTATCAATAGTCTTAGTATTGGTTTTTTCACTTCATCTCTATGTAAGGTTTGTTCTACGACGCGCTTCGCGTCGTAGAGCGGCCATTCACCATCTTAGCCTCACTGTGGCACATGCTCATGCCCATACAAATGAACCACATAACACAGGACTCGACCCTTTAGTAATCAAGGCTCTTCCCATGTTCATCTTCAAGAGAAAAATAGAAGACCGTGATTATGATGAGTGTGCTGTGTGTTTGAGTGCCCTAGAGGATGAAGAAATGGTTAGGTTGTTACCAAATTGTAAGCACACTTTCCATGTTAGTTGCATTGATACATGGTTGGCTTCACACTCTACGTGTCCAATTTGTAGAACCAAGGCTGAACCGCGGATCGAACCGCAGCCGCGTGAGGGTCCTAATGGCTTGGTTTTTCATGGTGCACCAATGGTTCCCCTCTTGGTTGAACCCATAGAAGGTACATCAGATGGAACTACTATATTTGGGTCACCCAAAATCAATGGTTCTAATTCAAGATTTAGTTCATTCCGAAGGATTCTTAGTAGGGAGAGATCATCTAGAAGAATTCAACCTTTTAGCCATGATGATATTGATCATGATTTAGAGAGACAGTGA 720 0.4222 MGFFDELQAPHSTSNPNNMGHNDFNKKILLAAIVFLSIVLVLVFSLHLYVRFVLRRASRRRAAIHHLSLTVAHAHAHTNEPHNTGLDPLVIKALPMFIFKRKIEDRDYDECAVCLSALEDEEMVRLLPNCKHTFHVSCIDTWLASHSTCPICRTKAEPRIEPQPREGPNGLVFHGAPMVPLLVEPIEGTSDGTTIFGSPKINGSNSRFSSFRRILSRERSSRRIQPFSHDDIDHDLERQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0750 239 SMART ring_2 111 152 IPR001841 -
Lal8g0750 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 160 IPR013083 -
Lal8g0750 239 Pfam Ring finger domain 109 153 IPR001841 -
Lal8g0750 239 Coils Coil 229 239 - -
Lal8g0750 239 SUPERFAMILY RING/U-box 90 164 - -
Lal8g0750 239 CDD RING-H2_PA-TM-RING 110 153 - -
Lal8g0750 239 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 23 239 - -
Lal8g0750 239 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lal8g0750 239 PANTHER RING FINGER DOMAIN-CONTAINING 23 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0750 Lal-Chr8 5387359 5388078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0750 18 238 C3H Transcription Factor Family AT2G42360 45.887 3.33e-51 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0750 K19038 - gmx:100780265 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0750 8 5387359 5388078 Lal8g0750 8 5387359 5388078 ECH
Lal10g0672 10 14525305 14525949 Lal8g0750 8 5387359 5388078 LSH