Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0720 ATGTCTTCTAAGATGAGGTTAATGAAAAAAATGATGAGACCAAATAGCAATTCAACCACTGTTAAAGCAATCACTATTACTACTCCAAGATTCCAAAATCAAGTGCATGAAAACAGGCAGAGCCAAAGAAGCCCTTATAACAACGGCAATAACACTGCCACTATTAGGGTTTGTTCAGATTGTAGCACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTAATGGTCCTAAGTCACTTTGCAATGCATGTGGCATCAGACAAAGGAAGGCAAGAAGGGCAATGGCAGAAGCAGAAAATGGTTTAGCCACTAATGCATCATCATCATCTATAAAGACTAGAGTTCATAACAAGGAAAAGAAGTCTCGTACAAACCATTTTTCACAGTTCAAGAATAAGTGCAAGTCCACTGCTATCACTGCAGGCTCATCTCAAGGGGAAAGGAAGCTTGAATGTTTCAAAGACTTTGCACTAAGTTTGAGGAATAACTCAGCTTTTCAGCAAGTATTTCCAAGGGATGAAGTAGCTGAGGCAGCATTGCTTTTAATGGATTTATCATGTGCTTTTGTTTAA 570 0.3982 MSSKMRLMKKMMRPNSNSTTVKAITITTPRFQNQVHENRQSQRSPYNNGNNTATIRVCSDCSTSSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAENGLATNASSSSIKTRVHNKEKKSRTNHFSQFKNKCKSTAITAGSSQGERKLECFKDFALSLRNNSAFQQVFPRDEVAEAALLLMDLSCAFV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0720 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 54 91 - -
Lal8g0720 189 CDD ZnF_GATA 57 94 IPR000679 GO:0006355|GO:0043565
Lal8g0720 189 ProSiteProfiles GATA-type zinc finger domain profile. 56 88 IPR000679 GO:0006355|GO:0043565
Lal8g0720 189 Pfam GATA zinc finger 58 91 IPR000679 GO:0006355|GO:0043565
Lal8g0720 189 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 189 - -
Lal8g0720 189 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 189 - -
Lal8g0720 189 Gene3D - 53 135 IPR013088 GO:0006355|GO:0008270
Lal8g0720 189 MobiDBLite consensus disorder prediction 99 125 - -
Lal8g0720 189 ProSitePatterns GATA-type zinc finger domain. 58 83 IPR000679 GO:0006355|GO:0043565
Lal8g0720 189 SMART GATA_3 52 104 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0720 Lal-Chr8 5126907 5129891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0720 1 189 C2C2-Gata Transcription Factor Family AT4G26150 41.315 1.90e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal8g0720 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0720 - - gmx:100780326 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0720 8 5126907 5129891 Lal8g0720 8 5126907 5129891 ECH
Lal8g0720 8 5126907 5129891 Lal4g0164 4 1027439 1029879 PCT
Lal4g0164 4 1027439 1029879 Lal8g0720 8 5126907 5129891 PCT