Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0700 ATGGGTTTTAATGATATATCTAACACGGGGCTTCAATTTGGTCTTGGTCTTAGTCTTGGCCTCCATGATCATCACAAGCAAAGAGATAAAATCCAGATAAAAAGAGAAGATGATCCATCAAAATGTAACAAGGCATATCCATCTCTAACATTAGGACCAAGTAGTGATGATCATGCACCTGGTTCGAAGATTGAAGCCTCTTCACGTAGCACCGTGTCTTCTTCATTGGTTTCCAACTCTTCTAGTATCATGAGGGAGAGAGACCATTTTTTAGGTCAAGAATTTGAGGTAGAGGTAGAGGTAGAGGTAGAGAAGGTTCCATCAAAGGTACGCAATTTTGATGGTGAAGATATTAACCCAAGGAAGAAACTTAGGCTCACTAAAGAACAATCAGCAGTATTAGAGGAAAATTTCAAAGAGAATTCTACTCTTAATCCGAAGCAAAAGCAAGAGCTAGCAAGAAAGCTGAATTTGAGGGCGAGACAAGTAGAGGTGTGGTTTCAAAATAGAAGAGCCAGGATAAAACTGAAGCAAACAGAATCTGATTTTGAGTCACTAAATAAGTACTGCAAGACTCTAACAGAGGAGAACAAGAGGCTGCAAAAGGAGCTTCAAGAACTTAAATCAATGGTAACATCATCAGGATCCTTTCATGTGCAAATTCCAGCAAGAGAGAATTTGCAGTGGTAA 690 0.3928 MGFNDISNTGLQFGLGLSLGLHDHHKQRDKIQIKREDDPSKCNKAYPSLTLGPSSDDHAPGSKIEASSRSTVSSSLVSNSSSIMRERDHFLGQEFEVEVEVEVEKVPSKVRNFDGEDINPRKKLRLTKEQSAVLEENFKENSTLNPKQKQELARKLNLRARQVEVWFQNRRARIKLKQTESDFESLNKYCKTLTEENKRLQKELQELKSMVTSSGSFHVQIPARENLQW 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0700 229 ProSiteProfiles 'Homeobox' domain profile. 117 177 IPR001356 GO:0003677
Lal8g0700 229 Coils Coil 176 210 - -
Lal8g0700 229 SMART halz 177 220 IPR003106 GO:0006355|GO:0043565
Lal8g0700 229 MobiDBLite consensus disorder prediction 31 79 - -
Lal8g0700 229 Pfam Homeobox associated leucine zipper 177 211 IPR003106 GO:0006355|GO:0043565
Lal8g0700 229 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 17 223 - -
Lal8g0700 229 MobiDBLite consensus disorder prediction 64 79 - -
Lal8g0700 229 SMART HOX_1 119 181 IPR001356 GO:0003677
Lal8g0700 229 SUPERFAMILY Homeodomain-like 118 186 IPR009057 -
Lal8g0700 229 ProSitePatterns 'Homeobox' domain signature. 152 175 IPR017970 GO:0000981|GO:0006355
Lal8g0700 229 CDD homeodomain 120 178 IPR001356 GO:0003677
Lal8g0700 229 Pfam Homeodomain 121 175 IPR001356 GO:0003677
Lal8g0700 229 Gene3D - 115 185 - -
Lal8g0700 229 PANTHER - 17 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0700 Lal-Chr8 4969290 4972119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0700 1 223 Homeobox Transcription Factor Family AT2G22800 48.661 2.12e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal8g0700 Homeodomain 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0700 K09338 - gmx:100807072 227.254