Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0687 ATGAAAGGTGGTGTTTTGAGTAATGAGAAGTTGGATCTGAAGGTGATGATTGAAGAGTTGGAGTCAAATTTTGAAGTACCTTCAGTGTTTATATGCCCAATCTCATTGGAGCCAATGCAAGAGCCAGTGACCCTTTGCACAGGTCAAACCTATGAAAGATCCAACATCCTTAAATGGTTGTCACTTGGTCACAAAACTTGTCCTACAACAATGCAAGAGCTTTGGGATGATTCTGTCACACCAAACAAAACTTTGAGCCATTTAATCCTCACTTGGTTCTCTCACAAGTACTTGGACATGAAGAAGAAGTTAGAGGATGTGCAAGGAAGAGTTTTGGAACTGTTGGACATGTTGAAGAAGGTTAAAGGTCAAGCTAGAGTTAGAGCACTTAAGGATCTAAGGAGAATTGTTACTTCTCATGTGTGTGCAAGGAAGGTTGTTGAAGAAAATGGTGGGATTGGTTTGGTTTCTTCTTTGTTGGGTCCTTTCACTTCACATGCTGTTGGGTCTGAAGCAATTGGGATAATTGTGAATTTGGATTTGAGTTTGGAGTTGAAGAGAAATCTTATGCATCCAGCTAAGGTTTCATTGGTGGTGGATATTATGAATGAAGGAACAATAGAGACAAAGATGAATTGTGCAAAGTTGATTGAGATTTTGTTAATGGAAGAAGGGAATGACTACGAGGCTGAACTTGTGTCAAGTTTGAGTCTTTTAGTTGGGTTATTAAGGTTAGTGAGGGATAAGAAAAACCCATGTGGGGTATTAACTGGGCTTATATTACTTAAGTCTATATGTTCCCATGAATCAGTTAGAACTTCTTTGGTAAGCATAGGAGCAGTTCCTCAAATGATTAAGCTTTTGCCTAATTTGAATAATGAATGCTTAGAAATAGCACTTCATATTCTAGAGGTGTTATCAACCATTCCAGAGGGAAGATTGGCTTTGAAAGAATGTCCAAATATTATTCCTTATGTGGTGAAGTTATTGATGAGAGTTTCTGAGAGTTGCACACAAATTGCATTGTCAATATTGTGGGCTATTTACAAGCTTGCACCAGAGGAATGTGCTGCACAAGCAGTGGAAGCTGGGTTAGCAGCAAAATTGTTGCTTGTAATTCAGAGTGGCTGCAATCCTGTGTTGAAGCAAATGTCTTCTGAGTTTTTGAAAATGTGTAGTGTCAATTACTCTGCTAGTATCTTCATTTCTAAGTGTATGCTCACCACAACAATACAATGA 1239 0.385 MKGGVLSNEKLDLKVMIEELESNFEVPSVFICPISLEPMQEPVTLCTGQTYERSNILKWLSLGHKTCPTTMQELWDDSVTPNKTLSHLILTWFSHKYLDMKKKLEDVQGRVLELLDMLKKVKGQARVRALKDLRRIVTSHVCARKVVEENGGIGLVSSLLGPFTSHAVGSEAIGIIVNLDLSLELKRNLMHPAKVSLVVDIMNEGTIETKMNCAKLIEILLMEEGNDYEAELVSSLSLLVGLLRLVRDKKNPCGVLTGLILLKSICSHESVRTSLVSIGAVPQMIKLLPNLNNECLEIALHILEVLSTIPEGRLALKECPNIIPYVVKLLMRVSESCTQIALSILWAIYKLAPEECAAQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSVNYSASIFISKCMLTTTIQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0687 412 PANTHER WDSAM1 PROTEIN 8 411 IPR045185 GO:0061630
Lal8g0687 412 SUPERFAMILY ARM repeat 113 393 IPR016024 -
Lal8g0687 412 Pfam U-box domain 26 96 IPR003613 GO:0004842|GO:0016567
Lal8g0687 412 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 411 - -
Lal8g0687 412 CDD RING-Ubox_PUB 30 72 IPR045210 -
Lal8g0687 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 107 IPR013083 -
Lal8g0687 412 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Lal8g0687 412 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Lal8g0687 412 Gene3D - 108 408 IPR011989 -
Lal8g0687 412 SUPERFAMILY RING/U-box 23 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0687 Lal-Chr8 4842449 4843687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0687 8 412 U-box Gene Family AT3G49810 65.185 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0687 - - gmx:100808281 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0687 8 4842449 4843687 Lal8g0687 8 4842449 4843687 ECH