Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0601 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTTCGTACTCCAGCAACAATATTAACAGCGATGCCGGCAATTTCGAATGCAACATATGCTTCGATTTAGCACAAGACCCTATAGTCACTTTATGTGGTCATCTCTTCTGCTGGCCTTGTCTTTACAGATGGCTTCACTTCCATTCAAAGTCACGAGAATGCCCAGTGTGCAAGGCCCTCGTCGAGGAGGAAAAGTTGGTTCCCTTATATGGGAGAGGAAAGACGTCGACTGATCCGAGATCGAAATCTATTCCAGGTGTTAATATCCCACACCGCCCTGCTGGTCAGAGGCCCGAAACAGCTCCTCCACCTGAATCTAATGCTTTTCCTCAACCCGGCTTTGGATTCACGGGCGGGTTGAGAGGGTTTGCACCGATGGCAACTGCAAGATTTGGGAATTTTACATTGGCTGCAGCAATTGGTGGTTTTCTTCCATCCTTATTTAACTTTCAGTTGCAAGGGTTTCATGATAGTGCCATCACTGCCATGTATGGTGGAACAACTGGTTTTCCATATTGGTTTTCTAATTCATTTCATGGTGGTGGCCATTTTCATAGATATCCTCCCCACAGAGGTCAAGGGCAGCAAGATTACTATCTGAAGAGGCTGCTAATGATTATTATTTTTTGTGTCGTTCTTGCTTTGATTTGGCAATAG 702 0.4601 MASGFGESTSRSPPSPSYSSNNINSDAGNFECNICFDLAQDPIVTLCGHLFCWPCLYRWLHFHSKSRECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNAFPQPGFGFTGGLRGFAPMATARFGNFTLAAAIGGFLPSLFNFQLQGFHDSAITAMYGGTTGFPYWFSNSFHGGGHFHRYPPHRGQGQQDYYLKRLLMIIIFCVVLALIWQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0601 233 SMART ring_2 32 72 IPR001841 -
Lal8g0601 233 MobiDBLite consensus disorder prediction 86 123 - -
Lal8g0601 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 233 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal8g0601 233 MobiDBLite consensus disorder prediction 1 20 - -
Lal8g0601 233 PANTHER OS12G0636000 PROTEIN 2 233 - -
Lal8g0601 233 CDD RING-HC_AtRMA_like 30 74 - -
Lal8g0601 233 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Lal8g0601 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 86 IPR013083 -
Lal8g0601 233 SUPERFAMILY RING/U-box 28 85 - -
Lal8g0601 233 Pfam Zinc finger, C3HC4 type (RING finger) 31 72 - -
Lal8g0601 233 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0601 Lal-Chr8 4170616 4173123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0601 30 216 C3H Transcription Factor Family AT1G19310 63.542 6.22e-83 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0601 K10666 - rcu:8260936 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0601 8 4170616 4173123 Lal8g0601 8 4170616 4173123 ECH