Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0566 ATGCTAACAAAGGAAATGGCAACTCCTGTTGAGCCTCCAAATGGGATCAGAAATGAAGGAAAGCATTACTACTCCATTTGGCAAAGCCTGTTTGAGATTGATACAAAGTATGTGCCCATCAAGCCTATAGGTAGAGGGGCATATGGTATTGTTTGTTCTTCTGTGAACAGAGAAACCAATGAAAAGGTTGCAATCAAAAAGATACAAAATGCCTTTGAAAATCGCATTGATGCGCTTAGGACTTTGCGCGAACTGAAACTTCTTACTCACCTTCAGCATGTTAATGTGATTTCTTTAAAAGATATCATGATGCCAGTTCATAGAAAAAGTTTCAAGGATGTCTATTTAGTGTATGAACTCATGGACACTGATCTGCATCAGATTATTAAGTCTTCTCAAGCACTATCTAATGACCACTGCCAATATTTCCTCTTTCAGTTACTTCGGGGCTTGAAGTATCTTCACTCAGCTAACATCCTCCATCGTGACCTGAAGCCTGGGAATCTTCTAATTAATGCAAACTGTGACCTAAAAATATGTGATTTTGGGTTGGCACGCACTCACACCAGCAAGAACCAGTTCATGACTGAGTATGTTGTCACACGGTGGTATAGGGCACCAGAGCTGCTTCTCTGCTGTGACAACTACGGGACATCTATTGATGTATGGTCCGTGGGATGCATCTTTGCGGAACTTCTGGGACGTAAACCTATTTTCCCTGGTTTGGAGTGTCTTAACCAGCTAAAACTGATTATCAACATCCTTGGTAGCCAGAGGGAGGAGGATCTCGAATTTATCGATAATCCAAAGGCAAAGAGGTACATCAAATCACTTCCATACTCTCCTGGAATCCCATTTCCCCTACTTTACCCTAATGCTCATCCGTTAGCCATTGATCTACTGATGAAAATGCTTGTATTTGATCCATCAAAGAGGATTAGTGTCACTGAAGCACTTCTACACCCTTACATGGCCCCTCTGTATGATCCTAATTCTGACCCTCTAGCCATCATTCCAATTGATCTTGACATAGACGAGGATCTCGGGGAAGAAACGATACGGGAAATGATGTGGAGGGAAATGCTTCATTACCATCCTGAATCTGCTATGACCAATGCTGAGCTTTGCTCATGA 1134 0.4206 MLTKEMATPVEPPNGIRNEGKHYYSIWQSLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIQNAFENRIDALRTLRELKLLTHLQHVNVISLKDIMMPVHRKSFKDVYLVYELMDTDLHQIIKSSQALSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTHTSKNQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGLECLNQLKLIINILGSQREEDLEFIDNPKAKRYIKSLPYSPGIPFPLLYPNAHPLAIDLLMKMLVFDPSKRISVTEALLHPYMAPLYDPNSDPLAIIPIDLDIDEDLGEETIREMMWREMLHYHPESAMTNAELCS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0566 377 SMART serkin_6 37 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g0566 377 Gene3D Phosphorylase Kinase; domain 1 24 360 - -
Lal8g0566 377 Pfam Protein kinase domain 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g0566 377 SUPERFAMILY Protein kinase-like (PK-like) 30 331 IPR011009 -
Lal8g0566 377 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 371 - -
Lal8g0566 377 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 371 - -
Lal8g0566 377 CDD STKc_TEY_MAPK 31 366 - -
Lal8g0566 377 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Lal8g0566 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Lal8g0566 377 ProSiteProfiles Protein kinase domain profile. 37 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g0566 377 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Lal8g0566 377 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0566 Lal-Chr8 3926029 3929195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0566 6 375 MAP Kinase Gene Family AT1G10210 84.595 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lal8g0566 Pkinase 1.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0566 K20535 - gmx:100798863 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0566 8 3926029 3929195 Lal8g0566 8 3926029 3929195 ECH