Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0553 ATGAAGATTCACTGCGACGTTTGCACAAAAAACGACGCTTCTCTTTTCTGCACCGCCGATGAAGCTGCACTCTGTGACTCCTGCGACCACCGTGTCCACCATGCCAATAAACTCGCCTCCAAGCACCACCGCTTCTCTCTTCACCGTCCCTCTTCTAACCAATACCCTCTCTGCGATATTTGCCATGAAAAAAAAGCATTTTTGTTTTGCCAACAAGACAGAGCCATTTTGTGTGGAGATTGTGATTTATCTATTCATTCTGTAAATGAGTACACTGAGAAGCATGATAGGTTTCTTCTCAGTGGGGTTAAGCTCTCAGCTTCTGCTAAAGTGTATTCATCAAATGATTCTAATTCAACTAAGTTATCACATTCTTCTGTGAAAAATTCATATCCAATATCACCTTTTATGCCTTATAAGACAACTCCTTCACCAGCATCAACAGTTCCCAACGCTATTGAAGGAGTTGGTTCAACAAACACTAGTAGCATATCTGAGTATTTGATAGAAACTATTCCTGGATGGCAAGTTGATGATTTTCTTGATTCATCTTCTGTTTCCATCACTTTCTCTAAGAGTAATGACATGTTGCCATTGTTTGAGGCTAATATTGAAGAGAATATGGGTTCCTTCTCAGGGATCTGGGTTCCTCAAGCACCAACACCTCCTCTATATTCTTCTTCACAAATGGATAGGCAAATTGAGAATAAAGGGACAAATGATGGAATCAACATGAAAGGAAGCAACAGTTCAAGGTTGAGGGATAATGATAGTAATTTCATAGTTCCACAGATTAGCCCTGTCTCAAACTCCAAAAGACCCAGATTTCTATGGTAG 837 0.4026 MKIHCDVCTKNDASLFCTADEAALCDSCDHRVHHANKLASKHHRFSLHRPSSNQYPLCDICHEKKAFLFCQQDRAILCGDCDLSIHSVNEYTEKHDRFLLSGVKLSASAKVYSSNDSNSTKLSHSSVKNSYPISPFMPYKTTPSPASTVPNAIEGVGSTNTSSISEYLIETIPGWQVDDFLDSSSVSITFSKSNDMLPLFEANIEENMGSFSGIWVPQAPTPPLYSSSQMDRQIENKGTNDGINMKGSNSSRLRDNDSNFIVPQISPVSNSKRPRFLW 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0553 278 Pfam B-box zinc finger 53 96 IPR000315 GO:0008270
Lal8g0553 278 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lal8g0553 278 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal8g0553 278 CDD Bbox1_BBX-like 57 100 - -
Lal8g0553 278 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal8g0553 278 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 275 - -
Lal8g0553 278 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 275 - -
Lal8g0553 278 Gene3D Classic Zinc Finger 1 94 - -
Lal8g0553 278 CDD Bbox1_BBX-like 5 47 - -
Lal8g0553 278 MobiDBLite consensus disorder prediction 234 256 - -
Lal8g0553 278 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0553 Lal-Chr8 3825853 3827442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0553 1 278 C2C2-CO-like Transcription Factor Family AT1G75540 45.783 1.19e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal8g0553 zf-B_box 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0553 - - gmx:100790972 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0553 8 3825853 3827442 Lal8g0553 8 3825853 3827442 ECH