Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0543 ATGGCCTTAGGAAAATCAAGTAAGCTTTCACAAAAAGCACTTCTTAAGCAAATTCTGAAGAGATGTTCCAGTCTAGGGAAGAAACAAGGCTATGATCATGATCAAGGGATCCGGTTTGATGTTCCAAAAGGTCACTTTGTTGTGTATGTTGGAGAAAACAGAAGCAGATACATCATTCCAATCTCTATTCTAAGTAGACCAGAGTTCCAAACCTTGCTCCATCAAGCTGAAGAAGAGTTTGGCTTTGATCATGAAAATGGTCTCACAATTCCTTGTGAGGAAGATGTTTTCGAGTCTCTTACATCCATGCTAAGATGA 318 0.3931 MALGKSSKLSQKALLKQILKRCSSLGKKQGYDHDQGIRFDVPKGHFVVYVGENRSRYIIPISILSRPEFQTLLHQAEEEFGFDHENGLTIPCEEDVFESLTSMLR 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0543 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 105 IPR003676 GO:0009733
Lal8g0543 105 Pfam Auxin responsive protein 27 104 IPR003676 GO:0009733
Lal8g0543 105 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0543 Lal-Chr8 3709224 3709541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0543 3 104 Calmodulin-binding Proteins AT4G34750 37.255 1.06e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0543 K14488 - pvy:116128449 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0543 8 3709224 3709541 Lal15g1507 15 17201197 17201502 ECH
Lal8g0543 8 3709224 3709541 Lal23g1461 23 14967820 14969256 ECH
Lal8g0543 8 3709224 3709541 Lal8g0543 8 3709224 3709541 ECH