LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0522	ATGATGACACAGGAAACAGCACCATCCTTGTCTTCCTTCACATGTCAATGGACTTATGATGTTTTCCTAAGTTTTAGAGGTGAAGATGCTCGCCATGAATTCACAAGTAATCTCTATAATTCTCTGCATCAAAAGGGAATCCTAACTTTCATTGACAATGAAGGGCTTAGAAGAGGGGAAGAAATTACACCTGCTCTTCTCAAAGCTATTCAAGAATCCAGGATTGCTATTATTATTTTCTCTAAGAACTATGCTTCATCAACATATTGTTTGGATGAACTTGTCAAGATCATGCAGTTCTCAAAGAATGGAACTTATACAGAAGCTTTTGCAAAACATGAGGAAAGTTTCAAAGAGGAGAAGATAGAAGAGTGGAAGAAGGCTTTATGTCAAGCAGCAAATTTGTCTGGCTGGCATTTCCAACATGGGTCTGAACCAGAATATAAGTTTATTGGAAAGATCATCAAACAGGTCTCGGATAAGATCAATCGCGTTCCTTTACATGTTTCAGATAATCCAGTTGGTCTACAGTTTCCGGTGTTAGAAGTGACATCCCTTCTAGGACTTGAGTCTAATGTCAATATGGTAGGGATTTATGGTATTGGTGGAATCGGTAAAACGACAATTGCTCGTGCTGTGTATAACTTGATTGCTGATCAATATGAAGGTTTGTGTTTCCTTGCTGACATAAGAGAAAAGGCAATTAATAAGCATGGCCTTGTACAGCTCCAAGAAACACTACTTTATGAAATACTTGGGGAGAATGATATCAAAGTAGGTGATGTCAATAAAGGAATTCCAATAATAAAAAGGAGGCTTCAACAAAAGAAGGTTCTTTTGATTCTAGATGATATTGACAAACTAGTGCAGTTAAAGGTACTAGCAGGAGGATATGATTGGTTTGGCTGTGGCAGCAAAATCATTATCACAACAAGAGACAAACAATTGCTTGTTACTCATGGGATAACAAATTTATATGAAGTTAAACATTTAATGGATGAAAAAGCTCTTGAATTGTTTAGTTGGCATGCCTTTAAAAGTAGAAAAGTTAATGCAAGTTATGCGGATATTTCAAACCGTGCTGTTTTATATGCTTGTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCTCACTTATTTGGTAAAAGTTTAGATGAATGTTATTCTGCATTAGATAAGTATGAAAAATATCCTCATAGAGATATCCATGAAATACTTAAAGTAAGCTTTGATGGTTTGGATGAAGATGAAAAGGGAATTTTCCTTGATATAGCTTGTTTCTTCAATACTTTCAAAATGGACTATGTCAAAGAAATGCTACGCGCTCATAGTTTTCATGCAGAAAATGGCATTCGAGTGTTGGCTGACAAATCACTCCTAAAGATTAGTGATGATGATTGTGTGAGAATGCATGACTTAATTCAAGACATGGGCAGAGAAATCGGAAGGCAAGAATCAACACTTGATCCCGGAAAGTGCAGTAGGCTATGGTTTGATGCAGACATCGTTCATGTTTTAGAAGAAAATACGGGGACTGATAAAATTGAAGTGATAATGCTTGATGAATGCAACAAAGAAGTGCAGTGGAGTGGAAAAGCCTTCAAGAAGATGAAAAACCTTAGAATTCTGATTATTGGAGATGCAATATTTTCTACAGGCCCTCAATATCTACCAAATAGGTTGAGAGTGATAGATTGGAGTTATTATCCGACACCATCTTTACCACCGACTTTCATTCCGAAAGAACTTATGATACTGAAGCTGCCAGAAAGTTGCCTTCAATTCTTCCAACCACTCAAGGCATATATACTGAGGTTTGAGTTCTTGTGGTTAATAAATTTTGAAGATCGCAAATTCTTAACTGAACTACCTAGCCTATGCGAAGCACCACTCCTGAGGCGTCTGTGTCTCGACAATTGCACTAAGTTAATTAGAATTCATGAGTCAGTTGGCTATCTTGATAATCTCTTATACTTGAGTGCTAAAGGATGCACTCTGCTACAAATTCTGGTACCCTGCATTAAGTTGACAGCTCTGGAGGTTCTGGATCTTGCATGGTGCTCAAATCTTAAGTGCTTCCCGGAAGTATCGGCGAAGATGGATAAAATAAGAGTTATTCATTTAGATGATACTGACATAAACAAGTTGCCATTTTCAATTGGAAATTTGGTTGGACTTGAATGCTTGTACCTTAGGGGATGTAAGTTGTTGAAGCATCTACCTAGTACTATCCACTCATTGCCTAAACTTCAAGTGATAGTAGGTTATCCGAGTAAACGATTTCGGTTTTTCGACAAAGAAAAAGTGTGCTCAGAATCAGAAATATCTCCAAGAGCCATGGTTGTTTATAATAAAGGCCAAGGTTTCACCCACCTGGATGTATTTTCTGAGTGCTTAAGCAGCAACATTTTCATCCAATTATGTACTCCCAATAGGCTTGAGGATCCTCATTTTGAATTGTTGTTCAAAGTGCTTAATAGGAACACTGTCACAACTGAGATGAAAGAATCAATACATTTCTGGTTTCTAAATAAATTCCCAAAGATAACTCTATGTTGTGGTAGAGAACCTGACACATATGTAAAGGATAATCTGGTTTTATATTTCAAGTTGAATGTAGTCATCAATGGCACTACACAATTCAGTTCTTCATGTACATACATTAATACAGGGGACCCTATATATTTGACCCAAGTATTTTTGTGTGATCTAGAATGCAAATCAGAGGGGGTATTTTTAGAGCATGAGTGGAATGAAGTTGAGATTTTATGTGAGTTTGAGTACCCCAAACCATGTGATTATGAAATGGCAACAGGGTTAAGGAACATAAATTGA	2835	0.3704	MMTQETAPSLSSFTCQWTYDVFLSFRGEDARHEFTSNLYNSLHQKGILTFIDNEGLRRGEEITPALLKAIQESRIAIIIFSKNYASSTYCLDELVKIMQFSKNGTYTEAFAKHEESFKEEKIEEWKKALCQAANLSGWHFQHGSEPEYKFIGKIIKQVSDKINRVPLHVSDNPVGLQFPVLEVTSLLGLESNVNMVGIYGIGGIGKTTIARAVYNLIADQYEGLCFLADIREKAINKHGLVQLQETLLYEILGENDIKVGDVNKGIPIIKRRLQQKKVLLILDDIDKLVQLKVLAGGYDWFGCGSKIIITTRDKQLLVTHGITNLYEVKHLMDEKALELFSWHAFKSRKVNASYADISNRAVLYACGLPLALEVIGSHLFGKSLDECYSALDKYEKYPHRDIHEILKVSFDGLDEDEKGIFLDIACFFNTFKMDYVKEMLRAHSFHAENGIRVLADKSLLKISDDDCVRMHDLIQDMGREIGRQESTLDPGKCSRLWFDADIVHVLEENTGTDKIEVIMLDECNKEVQWSGKAFKKMKNLRILIIGDAIFSTGPQYLPNRLRVIDWSYYPTPSLPPTFIPKELMILKLPESCLQFFQPLKAYILRFEFLWLINFEDRKFLTELPSLCEAPLLRRLCLDNCTKLIRIHESVGYLDNLLYLSAKGCTLLQILVPCIKLTALEVLDLAWCSNLKCFPEVSAKMDKIRVIHLDDTDINKLPFSIGNLVGLECLYLRGCKLLKHLPSTIHSLPKLQVIVGYPSKRFRFFDKEKVCSESEISPRAMVVYNKGQGFTHLDVFSECLSSNIFIQLCTPNRLEDPHFELLFKVLNRNTVTTEMKESIHFWFLNKFPKITLCCGREPDTYVKDNLVLYFKLNVVINGTTQFSSSCTYINTGDPIYLTQVFLCDLECKSEGVFLEHEWNEVEILCEFEYPKPCDYEMATGLRNIN	944

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal8g0522	944	Pfam	TIR domain	19	102	IPR000157	GO:0007165
	Lal8g0522	944	Pfam	NB-ARC domain	190	384	IPR002182	GO:0043531
	Lal8g0522	944	PRINTS	Disease resistance protein signature	195	210	-	-
	Lal8g0522	944	PRINTS	Disease resistance protein signature	272	286	-	-
	Lal8g0522	944	PRINTS	Disease resistance protein signature	365	379	-	-
	Lal8g0522	944	PRINTS	Disease resistance protein signature	674	690	-	-
	Lal8g0522	944	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	160	424	IPR027417	-
	Lal8g0522	944	SMART	till_3	18	135	IPR000157	GO:0007165
	Lal8g0522	944	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	667	-	-
	Lal8g0522	944	Gene3D	-	172	322	IPR027417	-
	Lal8g0522	944	Gene3D	-	330	414	IPR042197	-
	Lal8g0522	944	ProSiteProfiles	TIR domain profile.	17	162	IPR000157	GO:0007165
	Lal8g0522	944	Gene3D	Ribonuclease Inhibitor	490	774	IPR032675	-
	Lal8g0522	944	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	667	IPR044974	GO:0006952
	Lal8g0522	944	SUPERFAMILY	"Winged helix" DNA-binding domain	401	507	IPR036390	-
	Lal8g0522	944	SUPERFAMILY	L domain-like	523	753	-	-
	Lal8g0522	944	Gene3D	-	103	166	IPR035897	-
	Lal8g0522	944	Gene3D	-	15	102	IPR035897	-
	Lal8g0522	944	SUPERFAMILY	Toll/Interleukin receptor TIR domain	11	138	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0522	Lal-Chr8	3555491	3558880	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal8g0522	13	753	WRKY Transcription Factor Family	AT4G12020	32.992	2.68e-93	323

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal8g0522	-		-	gmx:100802408	1182.55