Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0493 ATGGAGTACGGTGTTGGAAGCGGTGGTGATGGTGGTGGTTCTTCTGATTCTCAGAGAAGGAAGAAGCGTTACCACCGTCACACTGCTAACCAGATTCAAAGACTAGAATCCATGTTCAAGGAGTGTCCACACCCTGATGAGAAACAAAGGATGCACTTGAGCAGAGAGTTAGGCTTGGCCCCTAGGCAGATCAAATTTTGGTTCCAGAACAGAAGAACTCAGATGAAGGCCCAGCATGAAAGAGCTGATAACTGCACACTCAGGGCAGAGAATGATAGAATTCGTTGTGAAAACATTGCCTATAGTGAGGCCTTAAAAAACATGTTCTGTCCCTCTTGTGGTGGCCCTCCACTCCAACAAGATCCTTATGTTGATGAACAAAATTTGAGAATGGAGAATATACAACTCAAAGAGGAGCTTGATAGGGTATCTAGCATTGCAGCTAAGTACATTGGAAGGCCAATTTCTCAGCTTCCATCAATTCAGCCTATTCATATATCCTCTTTGGATTTATCAATGGGGAGTTTTGGGACCAAAGGCTTAGTTGGTGGTCCTTCCCTTGATCTTGATCTTCTTCCAGGGAATGGTTCTTCATCATCAATGCAAAATGTGCCTTACCAGCCTCCTCGTCTTTCGGAGATCGATAAGTCCCTTATGTCAGACATTGCTTCAAATGCTATGGAAGAACTAATAAGGCTTTTGCAGACTAATGAGCCCTTGTGGATGAAGTCCACCACTGATGGGAGAGATACCCTTAATTTTGATACCTATGAAAGAATGTTCCCTAAGCCAAATAGTCACTTGAAGAACCCAAATGTTAGGATTGAAGCTTCTAGAGATTCAGGAGTTGTAATTATGAATAGCTTAACTTTGGTTGACATGTTCATGGATCCAAACAAGTGGGTGGAGCTATTTCCCACTATTGTCACATTGGCTAGAACTATTGAAGTTCTCTCTTCTGGCTCAATGGGTGGTCATAGCGACGCTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCAACTAGGGAGTTCTACTTCCTGCGATACTGTCAGCAAATCAAGCAAGGCTTGTGGGCAATAGTTGATGTTTCTTATGATTTTCCCCAAGATAACCAGTCTGTTCCTCAATTTCGATCCCGCCGTCTTCCTTCCGGTTGCTTTATACAAGACATGCCTAATGGTTATTCCCAGGTAACTTGGGTTGAGCATGTAGAGATTGAAGATAGAACTCCGGTTCATCGGTTCTATAGGAATCTTTTCTATAGTGGATTGGCATTTGGAGCAGAGAGATGGATTAGTACTCTTCAAAGGATGTGTGAAAGAATTGCTTGTCTAATGGTATCAGAAAATTCTACCAGGGATCTTGGATCGGTGATTCCATCAGCTGAGGGAAAGAGGAGCATGATGAAACTTGCACAAAGGATGATTACCAATTTCTGTGCAAGCATTAGCACATCAGCTAGCCATCGATGGACCACGCTGTCCGGAGTGGATGAGATTGGAGTCAGAGTCACTGTCCATAGTAGCTCAGACCCTGGCCAACCAAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCTATCCCTCCACAAATTGTGTTCAATTTCTTCAAGGATGAAAGAAAAAGACCACAGTGGGATGTTCTTTCCAATGGTAATGATGTGCAAGAGGTTGCACATATAGCAAATGGTTCACATCCTGGTAACTGCATATCTGTTCTTAGAGCTTTCAACACAAGTCAGAACAGCATGTTGATACTCCAAGAGAGCTGCATAGACTATTCAGGTTCTGTAGTGATTTATTGTCCAGTTGAATTGGCAGCCATTAACATAGCAATGAGTGGTGAAGACCCTTCATACATTCCTTTACTACCATCTGGATTCACCATTTCACCAGATGGACAAAATGATCAAGGAGTAGGAGGAGGAGATGGAGCATCAACAAGCTCAAACACAAACACAAACAGAAACACTTCAGGTGGGTCACTTGTCACAGTTGCATTCCAGATTCTGGTTAGTACATTGCCATCTGCAAAGCTGAACAAGGAGTCAGTGAATACTGTTAATAGCCTCATTGGAACCACTGTTCAGCAAATAAAAGCTGCTTTGAATTGTCCTAGTTCCTCATGA 2151 0.43 MEYGVGSGGDGGGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRMHLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRAENDRIRCENIAYSEALKNMFCPSCGGPPLQQDPYVDEQNLRMENIQLKEELDRVSSIAAKYIGRPISQLPSIQPIHISSLDLSMGSFGTKGLVGGPSLDLDLLPGNGSSSSMQNVPYQPPRLSEIDKSLMSDIASNAMEELIRLLQTNEPLWMKSTTDGRDTLNFDTYERMFPKPNSHLKNPNVRIEASRDSGVVIMNSLTLVDMFMDPNKWVELFPTIVTLARTIEVLSSGSMGGHSDALQLMYEELQVLSPLVSTREFYFLRYCQQIKQGLWAIVDVSYDFPQDNQSVPQFRSRRLPSGCFIQDMPNGYSQVTWVEHVEIEDRTPVHRFYRNLFYSGLAFGAERWISTLQRMCERIACLMVSENSTRDLGSVIPSAEGKRSMMKLAQRMITNFCASISTSASHRWTTLSGVDEIGVRVTVHSSSDPGQPNGVVLSAATTIWLPIPPQIVFNFFKDERKRPQWDVLSNGNDVQEVAHIANGSHPGNCISVLRAFNTSQNSMLILQESCIDYSGSVVIYCPVELAAINIAMSGEDPSYIPLLPSGFTISPDGQNDQGVGGGDGASTSSNTNTNRNTSGGSLVTVAFQILVSTLPSAKLNKESVNTVNSLIGTTVQQIKAALNCPSSS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0493 716 SUPERFAMILY Bet v1-like 214 447 - -
Lal8g0493 716 MobiDBLite consensus disorder prediction 639 665 - -
Lal8g0493 716 Gene3D - 12 92 - -
Lal8g0493 716 Gene3D - 220 443 IPR023393 -
Lal8g0493 716 CDD homeodomain 20 79 IPR001356 GO:0003677
Lal8g0493 716 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Lal8g0493 716 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 713 IPR042160 -
Lal8g0493 716 ProSiteProfiles START domain profile. 212 449 IPR002913 GO:0008289
Lal8g0493 716 CDD START_ArGLABRA2_like 216 445 - -
Lal8g0493 716 SUPERFAMILY Homeodomain-like 13 81 IPR009057 -
Lal8g0493 716 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Lal8g0493 716 Pfam START domain 222 446 IPR002913 GO:0008289
Lal8g0493 716 SMART HOX_1 19 82 IPR001356 GO:0003677
Lal8g0493 716 MobiDBLite consensus disorder prediction 1 27 - -
Lal8g0493 716 SUPERFAMILY Bet v1-like 468 707 - -
Lal8g0493 716 SMART START_1 221 446 IPR002913 GO:0008289
Lal8g0493 716 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Lal8g0493 716 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 4 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0493 Lal-Chr8 3370101 3373345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0493 16 716 Homeobox Transcription Factor Family AT1G73360 63.881 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal8g0493 START 1.3e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0493 K09338 - gmx:100785023 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0493 8 3370101 3373345 Lal8g0493 8 3370101 3373345 ECH
Lal8g0493 8 3370101 3373345 Lal25g0506 25 3574847 3578252 LSH
Lal8g0493 8 3370101 3373345 Lal10g0928 10 16672584 16676709 LSH
Lal16g0913 16 6015043 6018917 Lal8g0493 8 3370101 3373345 PCT
Lal15g0896 15 6745523 6749358 Lal8g0493 8 3370101 3373345 PCT
Lal23g0716 23 9803184 9807772 Lal8g0493 8 3370101 3373345 PCT
Lal8g0493 8 3370101 3373345 Lal16g0913 16 6015043 6018917 PCT
Lal8g0493 8 3370101 3373345 Lal15g0896 15 6745523 6749358 PCT
Lal8g0493 8 3370101 3373345 Lal23g0716 23 9803184 9807772 PCT