Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0482 ATGGTGTTAGGGTGGAGGAGAAGGAAGAACAACAACCATAAAGGTGTTAAGCAAAATGTTGAGGTAATTGTTCCTAACCACTTTATGTGTCCAATTTCATTGGACTTGATGAAAGATCCTGTGACATTGTCCACTGGGATAACATATGATAGACAAAATGTGGAAAAGTGGTTTGATGAAGGGAATTGTACATGCCCTGTTACATACCAGATTGTGAGGAACTTAGACATGACCCCAAACCATTCTCTTAGAATACTGACCCAAGATTGGTGTGTGGAAAATAAGCAACATGGGGTTGAGAGGATTCCAACACCAAGGATACCAGTTAGCCGATTCGATGTCGCCGAGCTTCTAATCCAAGTGAAGGCCTCAGCAAGAGGTTTGGACCAATATGGTTGCCTTGAATTGGTGCATAAAATGAAGAGGTTAGGCAATGAGATGGAGAGGAACAAAAGGTGCATAGTGGAGAATGGAGCACCAGGTGCATTGGCATCAGCATTTGATGCATTTGCAAATGATTCTATTGAGAGAAATGTGAATGTTCTTGAAGAGATTTTATCAGCACTGAATTGGATGTTTCCACTTAAATTGGAAGCACATAAATATTTGGGGTCTAAGGCTTCTTTAACTTGCATGGTTTGGTTCTTGAAGCAGCAAGGTTTATCAGGGAAAGAGAAATCTATTGTTACATTGAAAGAGCTTCTTTCATTTGGTGATGAGAAGCATGTAGAGGCATTGTCAGAAATTGAAGGAGTTTGTGAGTTATTGGTAGAGTTCATTAACAAGAGAATTAGTCCAACCATTACAAAGGCTTCAATGAGAGTAGTTTGGTACTTAGTTTCATCATCTTCTCCTTGTAGTGATAAAATGAAGTTAGCATTTGTTGAATTAGATTTGGTTTCTTCACTTTTGGACATTCTGATTGAGTCAGAAAAGAGCCTTTGTGAAAAAGCTTTAGCCATTTTTGAGTCCCTATGCAGTATTGAACAAGGGAGGGAAAAAGGTTATAGTAATTATCTAACAGTTCCTTTGTTGGTTAAAAAAATCCTAAGAGTTTCAGCATTGACCACAGAATACTGTATCTCTTCAATATGGAAGATGTGCAAATTAGGAGAAAAAGATGATGAAAAAAGAGTTATTGTTGAAGCATTTCATGTTGGTGCTTTTCAGAAAATACTGTTGGTATTGCAAGTTGGATGTGGTGATAAGATCAAAGAAAAAGCCACTGAGCTTCTCAAATTGATGAATCCTTATAGGGCTCATTTAGAATGCATAGACTCAGATTACAAGAATCTTAAGAGATCATTTTAA 1311 0.3753 MVLGWRRRKNNNHKGVKQNVEVIVPNHFMCPISLDLMKDPVTLSTGITYDRQNVEKWFDEGNCTCPVTYQIVRNLDMTPNHSLRILTQDWCVENKQHGVERIPTPRIPVSRFDVAELLIQVKASARGLDQYGCLELVHKMKRLGNEMERNKRCIVENGAPGALASAFDAFANDSIERNVNVLEEILSALNWMFPLKLEAHKYLGSKASLTCMVWFLKQQGLSGKEKSIVTLKELLSFGDEKHVEALSEIEGVCELLVEFINKRISPTITKASMRVVWYLVSSSSPCSDKMKLAFVELDLVSSLLDILIESEKSLCEKALAIFESLCSIEQGREKGYSNYLTVPLLVKKILRVSALTTEYCISSIWKMCKLGEKDDEKRVIVEAFHVGAFQKILLVLQVGCGDKIKEKATELLKLMNPYRAHLECIDSDYKNLKRSF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0482 436 Gene3D - 118 413 IPR011989 -
Lal8g0482 436 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Lal8g0482 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 97 IPR013083 -
Lal8g0482 436 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 436 - -
Lal8g0482 436 CDD RING-Ubox_PUB 28 70 IPR045210 -
Lal8g0482 436 SUPERFAMILY RING/U-box 24 100 - -
Lal8g0482 436 Pfam U-box domain 24 95 IPR003613 GO:0004842|GO:0016567
Lal8g0482 436 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Lal8g0482 436 PANTHER WDSAM1 PROTEIN 14 436 IPR045185 GO:0061630
Lal8g0482 436 SUPERFAMILY ARM repeat 144 415 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0482 Lal-Chr8 3249242 3250552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0482 5 436 U-box Gene Family AT5G37490 40.045 2.51e-104 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0482 - - lang:109340061 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0482 8 3249242 3250552 Lal25g0488 25 3407803 3409104 LSH
Lal8g0482 8 3249242 3250552 Lal10g0942 10 16782537 16783850 LSH
Lal23g0709 23 9742527 9743840 Lal8g0482 8 3249242 3250552 PCT
Lal8g0482 8 3249242 3250552 Lal23g0709 23 9742527 9743840 PCT