Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0474 ATGCAGTGGTCATTCTCAAACAAGGGCTCAGGCCTTTCTCAACATTTGTCACTAAAGGGCATTCAGGAAGATAGACAAAGAAAGACTGTTCTTGATTCAATAGCTTCATCAGGATATATGACAATATCAACTAAGGATACTTTTAAGTCTACCCAGAAACCTTTCTCTAATGTGGTCCAGAGAAAATTTTCCATAGGAAAGCAAGCAGGAAACCAACATGGAATCAAAGTCTATCCACAACAATGTTTTGATGCACATCCATGTAGCCATCAGGAATCAATAATATTTTCAGTTTCCAACCAAACAAATGAAGCAAGTCCTGTTCTTCAATCTAGTGTTGCTAATACCGGATCGAAAATGATCAATTCGGCCATAAAATCACAACCTCTTGGTTCCATATCCTCTGCCACACCTGTATCTGCCCTTCCATCTATAGGCTGCATTGTTGGCTCTACTGACTTAAGGAATTGTTCCAAATCCTCTGTCACACCTTCTCAGCTGACCATTTTCTATGGTGGTTCTGTATGTGTTTATGATGATGTATCTCCTGAGAAGGCTCAAGCTATCATGTTACTAGCTGGAAATGGTACAAAACCAATTCAGAACATGACACTTTCCACACCAAAATTGCAACCAGAATTCTCCATTCCCTCCAATGATGATTGTATCATTATAGGCCAATCCTTGCCCTCACCCCTGCCAAGCCCTCTCCCATTGACTTCTCGTATCGCTTCTCGGCCCTGTGTTGGATCTTCTAGCAGCAATGAACTCACAATACTAAGACCAACAGGACCTTTAACTACCCCTAGTAACCATTTGCAATCTCATAAAGTTGTTGCTTCTGTAGGATCTGCAGCTACAAAAATGGTTCAACAAGTTGGTGGATTGCCTCAGGCGCGCAAAGCATCCTTAGCTCGGTTTTTGGAGAAGCGAAAGGAAAGGGTGATTATGACATCGCCATATTATATGAACAAGAAATCATCACCTGAATGCAGCAATCATGGATCAAGTGGTTTTAGTTTTTCAATCACTTCCTCTGATTCATGTTCTCTACCAGCCATTATATGA 1068 0.411 MQWSFSNKGSGLSQHLSLKGIQEDRQRKTVLDSIASSGYMTISTKDTFKSTQKPFSNVVQRKFSIGKQAGNQHGIKVYPQQCFDAHPCSHQESIIFSVSNQTNEASPVLQSSVANTGSKMINSAIKSQPLGSISSATPVSALPSIGCIVGSTDLRNCSKSSVTPSQLTIFYGGSVCVYDDVSPEKAQAIMLLAGNGTKPIQNMTLSTPKLQPEFSIPSNDDCIIIGQSLPSPLPSPLPLTSRIASRPCVGSSSSNELTILRPTGPLTTPSNHLQSHKVVASVGSAATKMVQQVGGLPQARKASLARFLEKRKERVIMTSPYYMNKKSSPECSNHGSSGFSFSITSSDSCSLPAII 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0474 355 Pfam tify domain 163 194 IPR010399 -
Lal8g0474 355 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 1 231 - -
Lal8g0474 355 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 229 353 - -
Lal8g0474 355 SMART tify_2 160 195 IPR010399 -
Lal8g0474 355 Pfam Jas motif 297 322 IPR018467 -
Lal8g0474 355 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 229 353 IPR040390 -
Lal8g0474 355 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 231 IPR040390 -
Lal8g0474 355 ProSiteProfiles Tify domain profile. 160 195 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0474 Lal-Chr8 3177479 3183470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0474 1 331 Tify Gene Family AT3G17860 39.823 3.94e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lal8g0474 tify 3.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0474 K13464 - gmx:100807288 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0474 8 3177479 3183470 Lal8g0474 8 3177479 3183470 ECH
Lal8g0474 8 3177479 3183470 Lal10g0948 10 16808424 16811256 LSH