Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0459 ATGGTAGAACTCGATTTATCAAAGAAAGTAGCAGACAGGTATCTGAAGCGTGAGGTCCTTGGTGAAGGTACCTATGGGGTCGTTTACAAAGCCATTGATACTCAGACAGGACAGACGGTTGCAATTAAGAAAATTCGGCTTGGCAAGCATAAGGAAGGGGTGAATTTCACAGCTCTCAGAGAAATTAAACTCCTTAAAGAGCTTAAATATCCACATATAATTCAGTTGATAGATTCCTTCCCACATAAGGCAAATTTGCATCTTGTGTTTGAATTCATGGAAACAGATCTCGAAGCTGTCATACGAGACCGGAATATTTTTCTTTCGCCAGGCGATATAAAATCTTACATTCAAATGACATTAAATGGTCTTATGTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCTAATGGACAGCTGAAACTAGCAGATTTTGGTTTAGCGCGGATATTTGGAAGTCCAGGCCGCAGGTTCACTCATCAGGTATTTGCTCTATGGTACAGAGCACCTGAGCTATTATTTGGTACCAAGCAGTATGGTTCAGGGGTTGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTGCTTCTTCGTCGACCCTTTCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCGCAGCTCTTGGAACTCCATCACCTTCTCAGTGGCCTGATATGGTATACCTTCCTGATTATGTTGAATACCAATATGTTCCCGCCCCTCCTTTGCGCTCCTTGTTTCCAATGGCAAGTGATGATGCTCTAGATTTGTTGTCAAAGATGTTTACATATGATCCAAAAGTTAGAATTTCAGCTCAGCAGGCATTAGAGCACAGGCATTCTCTCCTCTTCCACTTTAGGTACTTTACTTCTGTACCTCTGCCCACAGATCCAGATAAGCTTCCGAGACCTGCTCCTAAGAGAGAACTCAAAGCTTCAGATTTTGAATCACATGATGGTCCTACTGGCATTTCACCTCCGAGAAAGTCTAGGAGAGTGATGCCAGGGCGTGATGGGTTTGAAGGCAATTCTTTGCAAAGAAATAAGACTGATGACAATGTTAGTAATTCTAGACAGACAACTGGTGATAATACAGGCAAGACTGATCCTGCACCAATGTCACTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGAACACATTTAAAAAGAAAATTAGATCTTGAGTTCTTGCAGCCAGAATGA 1272 0.4119 MVELDLSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKHKEGVNFTALREIKLLKELKYPHIIQLIDSFPHKANLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYIQMTLNGLMFCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPGRRFTHQVFALWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAALGTPSPSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMFTYDPKVRISAQQALEHRHSLLFHFRYFTSVPLPTDPDKLPRPAPKRELKASDFESHDGPTGISPPRKSRRVMPGRDGFEGNSLQRNKTDDNVSNSRQTTGDNTGKTDPAPMSLDFSVFGLKPPNRPTINSADRTHLKRKLDLEFLQPE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0459 423 Pfam Protein kinase domain 16 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g0459 423 SUPERFAMILY Protein kinase-like (PK-like) 9 293 IPR011009 -
Lal8g0459 423 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Lal8g0459 423 CDD STKc_CDK7 13 315 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lal8g0459 423 MobiDBLite consensus disorder prediction 359 381 - -
Lal8g0459 423 Gene3D Transferase(Phosphotransferase) domain 1 95 296 - -
Lal8g0459 423 SMART serkin_6 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g0459 423 PANTHER CELL DIVISION PROTEIN KINASE 9 364 - -
Lal8g0459 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lal8g0459 423 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 364 - -
Lal8g0459 423 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Lal8g0459 423 MobiDBLite consensus disorder prediction 308 408 - -
Lal8g0459 423 MobiDBLite consensus disorder prediction 314 329 - -
Lal8g0459 423 ProSiteProfiles Protein kinase domain profile. 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0459 Lal-Chr8 3053725 3057864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0459 8 420 Core Cell Cycle Gene Families AT1G73690 73.123 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lal8g0459 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0459 K02202 - jre:109020969 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0459 8 3053725 3057864 Lal8g0459 8 3053725 3057864 ECH
Lal8g0459 8 3053725 3057864 Lal25g0470 25 3244175 3250403 LSH
Lal8g0459 8 3053725 3057864 Lal10g0961 10 16922295 16925288 LSH
Lal15g0929 15 7129172 7134846 Lal8g0459 8 3053725 3057864 PCT
Lal8g0459 8 3053725 3057864 Lal15g0929 15 7129172 7134846 PCT