Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0447 ATGCCTATTGTCACAGAACACATGGAGTGGAGAAAACACAGAAACAGGTTGAGCCACACCATTTCAGAAACTGATCCTAACCCACAAGTCTCTTCCATAATCCAATCCACAAGTTGCAAATCCACCATTTCCTCTCTCCTCTTCTCTACTTTCTCCAACAACACTTCCAATGAAACCAAACATAAGAAGAAAAAGAGTAACAGCAACTTTTCTGCAACAACCTTGAGGGGCCTTGGCTGCAAGGCCAGTGCATCAAAGCATGTGTCAGTTCCTGCAGTGATTAGATCCTCAGCGGATTGGCAAGAGAAGAAGAAGAGCAGAAAGAAGAAGCATAGAAGAAACAGTGACAAGAACATTAGCAATGGTTCTTCTTCTTCTGCTGCTGCTGCTGCTGCAACATGTGTGGATTTTCAGGATGTTTGGTGTGGCCCTAGAATTGGGTTCTCAGTTGATGCTACTGTTGCATCCTCTGTGGAAAGGAAAAATGTGTCTTCAAGAGGGAATCTTGATGTGGAAATGATTACACACAGGGAGCGTCCATCTTATTTGGGAAGGAACACTGTAAACACAGAAAGCATATCAGTTCTGGATGATTATTCTGACATATTTACATCTCTCTCTGGTTTAGAGTCTTTTGCCACTTCTAGATACTATCGTCATGTTCCACATCCTTCCTCTGATGGTCTTGCTGAGATAATGATACTTCAAAGAAGACTCTTAATGGGGGAACAATTCAATTCACTTGACCAATTTGGAGACTGGAGACTTGATATTGATAACATGTCCTATGAACAATTGCTTGAGCTTGGTGAGAAAATTGGTTACGTGAACACTGGACTTAAAGAAGATGAGATGGGACTCAACATAAAGAGAATTAAGCTTGTAATTTCAAATGGTACATCAAAGAATCAAATAGACAAAAAGTGCACCATTTGTCAGGAGGAATATGAAGGGGGTGAAGAGCTTGGGAGGCTAAACTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGCTTATGCATAAAAACTTCTGCCCAATCTGCAAGCAAGAAGTTATGGTTTGA 1068 0.4092 MPIVTEHMEWRKHRNRLSHTISETDPNPQVSSIIQSTSCKSTISSLLFSTFSNNTSNETKHKKKKSNSNFSATTLRGLGCKASASKHVSVPAVIRSSADWQEKKKSRKKKHRRNSDKNISNGSSSSAAAAAATCVDFQDVWCGPRIGFSVDATVASSVERKNVSSRGNLDVEMITHRERPSYLGRNTVNTESISVLDDYSDIFTSLSGLESFATSRYYRHVPHPSSDGLAEIMILQRRLLMGEQFNSLDQFGDWRLDIDNMSYEQLLELGEKIGYVNTGLKEDEMGLNIKRIKLVISNGTSKNQIDKKCTICQEEYEGGEELGRLNCEHSYHFQCIKQWLMHKNFCPICKQEVMV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0447 355 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Lal8g0447 355 MobiDBLite consensus disorder prediction 95 124 - -
Lal8g0447 355 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 3 353 - -
Lal8g0447 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 354 IPR013083 -
Lal8g0447 355 SUPERFAMILY RING/U-box 308 353 - -
Lal8g0447 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 353 IPR045191 GO:0061630
Lal8g0447 355 SMART ring_2 309 349 IPR001841 -
Lal8g0447 355 Pfam Ring finger domain 308 350 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0447 Lal-Chr8 2978437 2983738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0447 4 264 C3H Transcription Factor Family AT1G73760 35.789 3.37e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0447 - - gmx:100818517 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g0678 23 9434197 9438836 Lal8g0447 8 2978437 2983738 ECH
Lal8g0447 8 2978437 2983738 Lal8g0447 8 2978437 2983738 ECH
Lal8g0447 8 2978437 2983738 Lal25g0466 25 3224309 3228232 LSH
Lal8g0447 8 2978437 2983738 Lal10g0820 10 15860942 15867302 LSH