Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0408 ATGTGTTCTGATAAGGACAAAAATAACCTGTCGTCGAAAAGCAAGATGAATGAAAGTAAGTCAAAGAAACATGACTCAAAAAAGGTTTCTGGTCTCAGCAGTCAGCCTTCTAGGAAGCAACATCGGAAGGGTGAAAACCCCATGCGATTCATACCAGAGCCTGATGTGCCTTCTGGTTTTGGACATTCAAACTCCTGGATCTGTAAAAATTCTGCTTGTAGAGCGGTTCTATCTAAATATGACCCATTTTGTAAAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCCAGTCTGTGGTTAGTATGCACATCTGAGTCTGCTCAAGGGGACTCCTGTGGGTTGTCTTGTCATATCGACTGTGCCCTTCAACATGAAAAAGTGGGAGTTGTCGATCATGGGCAGCTAATGCAATTAGATGGTGGTTATTGTTGTGCATCCTGCGGCAAAGTTACTGGGATAATTGGATGTTGGAAGAAGCAGGTAAGTATAGCAAAAGATGCTCGGCGTGTAGATGTACTATGTTACAGGATATATCTGAGCTACAAGCTTCTGGATGGGACTTCAAGATTTAAAGAATTGCATGAGATGATAAAAGAGGCAAAGGCTAAACTGGAAACTGAAGTAGGTCCAGTTGATGGAGTTTCTGCCAAGATGGCACGTGGAATTGTTAGCAGACTTCCTATTGCAAGTGATGTACAGAAACTGTGCTCTCTTGCTATTGAGAAAGCTGATGAGTGGTTGGCCACTATTCCCAATATAAATTCAGAATCCAGAGAGGGTTCTCTTCCTGCTGCCTGCAAGTTTGTTTTCGAAGAGGTAACTGCTTCGTCAGTCAAAATCATTTTAATTGAAATGCCAATTGTATTTTCTGAGCACATTAAGGGATATAAGCTCTGGTACTACAAGAGCAAGGATGAGTCGCACACAGAAGATCCTGTTTGTGTGTTTCCCAAAATTCAGAGGAGGATTTTGATATCTGACCTCCAGCCTTGCACAGAATATACTTTTCGGATTATATCTTTTACAGATATTGGTGATCTGGGTCATTCTGAGACCACGTGTTTCACCAAGAGCATCGAAATATTGGAAAAAATTTCGCCTTCATCGGTCGCTATGAATCATAAAAAGGAGAACCTTCAATCTGGAAGCAATTCTCCAGCCTCTAAAATGGAGCCTGATCCCAAAATGGAAGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAAATTTGTGTTTTGCTTGGGCCCAAGAACAAGGTTGCTTGGAGGGTTATTTCTGTGATGATAAGAAAATATGCTGTGGACCAAGCGAAACAATCAAGCCTAGCGACCCCGATGAGCAGTTGCCTTCATTTTCTCGAGGCCTTGATTTAAATGTTGTTTCGATGCCTGATTTAAATGAAGAGCTTATACCTCCTTTTGAGTCTTCAAGGGATGGAGATAATGGTTGCACATTGCAGCAGGCTGTTGAGGCTGATGAAGATGCCGCCTCTCATGATCTAGAGAAAAATTGTTTAGCAAGATTGCACAGTAGTGGTGACTCCCAAGCCGGGACTCATGGGCCAACTGGAGAAGTGCCTGCTGTTGACTCTCGCATAGATGCATGTAGGAAAAGGATAGCAAGTACAAGTGAAGAGATGCCCGACTGTGACAGCACTTTGATAAACGACTCTCCTTTACATGTACCTGATGGTTCATTGTCCTTAGATGAGAACTTTGAGTATTGCGTGAAAGTAATTAGATGGCTAGAATGTCAGGGTCATATCAAAAAGGAATTCAGATTGAAATTGCTGACTTGGTTTAGTTTGAGGTCGACCGAACAAGAACGTAGGGTGGTTAATACTTTCATTCAAACTCTGATTGATGATCCAAGTAGCTTGGCAGGGCAACTAGTTGACTCATTTTCAGATATAATATCCAACAAGAGGCCAAGAAATGGGTTCTGTAGTAAAGTGGTGGCATCAAATTAA 1983 0.4201 MCSDKDKNNLSSKSKMNESKSKKHDSKKVSGLSSQPSRKQHRKGENPMRFIPEPDVPSGFGHSNSWICKNSACRAVLSKYDPFCKRCSCCICHLFDDNKDPSLWLVCTSESAQGDSCGLSCHIDCALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGIIGCWKKQVSIAKDARRVDVLCYRIYLSYKLLDGTSRFKELHEMIKEAKAKLETEVGPVDGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLATIPNINSESREGSLPAACKFVFEEVTASSVKIILIEMPIVFSEHIKGYKLWYYKSKDESHTEDPVCVFPKIQRRILISDLQPCTEYTFRIISFTDIGDLGHSETTCFTKSIEILEKISPSSVAMNHKKENLQSGSNSPASKMEPDPKMEDSGFKVRDLGKNLCFAWAQEQGCLEGYFCDDKKICCGPSETIKPSDPDEQLPSFSRGLDLNVVSMPDLNEELIPPFESSRDGDNGCTLQQAVEADEDAASHDLEKNCLARLHSSGDSQAGTHGPTGEVPAVDSRIDACRKRIASTSEEMPDCDSTLINDSPLHVPDGSLSLDENFEYCVKVIRWLECQGHIKKEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCSKVVASN 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0408 660 CDD FN3 272 361 IPR003961 GO:0005515
Lal8g0408 660 PANTHER VIN3-LIKE PROTEIN 1 2 656 - -
Lal8g0408 660 Gene3D Immunoglobulins 268 364 IPR013783 -
Lal8g0408 660 ProSiteProfiles Fibronectin type-III domain profile. 267 366 IPR003961 GO:0005515
Lal8g0408 660 SUPERFAMILY Fibronectin type III 275 361 IPR036116 GO:0005515
Lal8g0408 660 MobiDBLite consensus disorder prediction 380 403 - -
Lal8g0408 660 Pfam PHD - plant homeodomain finger protein 68 186 IPR032881 -
Lal8g0408 660 MobiDBLite consensus disorder prediction 1 54 - -
Lal8g0408 660 PANTHER VIN3-LIKE PROTEIN 2-RELATED 2 656 IPR044514 GO:0010048|GO:0040029
Lal8g0408 660 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0408 Lal-Chr8 2756350 2767010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0408 1 651 PHD Gene Family AT3G24440 45.633 3.08e-177 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0408 - - gsj:114418583 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1027 16 6846707 6856360 Lal8g0408 8 2756350 2767010 PCT
Lal15g1004 15 8062644 8067776 Lal8g0408 8 2756350 2767010 PCT
Lal23g0632 23 9056035 9065639 Lal8g0408 8 2756350 2767010 PCT
Lal8g0408 8 2756350 2767010 Lal16g1027 16 6846707 6856360 PCT
Lal8g0408 8 2756350 2767010 Lal15g1004 15 8062644 8067776 PCT
Lal8g0408 8 2756350 2767010 Lal23g0632 23 9056035 9065639 PCT