Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0398 ATGGAGCAGAACAACGTGATAGCACCGTTCGTTATGAAGACGTACCACATGGTCAACGATCCCATTACTGATAATCTCATAACATGGGGGCCAACTAACAACACCTTCATTGTCATCGACCCTCTCGATTTCTCGCAATCCCTTCTCCCTGCTTTCTTTAAACACAACAACTTCTCTAGTTTCGTTCGCCAGCTCAATACATATGGTTTCAAAAAGGTGGATCCAGATCGATGGGAATTTGCCAACGAATGGTTTCTTCGAGGGCAGAAGCACATGCTGAAGAACATAGTGAGGAGAAAACACTGCAGTAGGAGCTATAATTCAAAATTTTCATCTATTTCTTCTTCAAATTCGCATTTAGGGAAGTTCGAAGAGTTGAATGATGAGGATATGGTGATGGAGATAACGAGGCTGAAGGAGGAGCAGAAGGCGTTAGATGAAGAGCTTCAAGAGATGAACAAGAGGTTAGAGACAACGGAGAAAAGACCCCAACAAATGATGACTTTCTTATGCAAAGTGGTAGAGGACCCTGATGTTCTTTCTCGAACACTAATCGAGCGAGAGCGGAAGCAGGTAGTGGAGAAGAAGCGGCGGTTGTTATCGGCGGCAACATCATCGTCATCATCATCTGGTATGGCGATTAAGACGGAGTTCGAGGAAGAGGAAACAACAGTAGGTAATACTATATTATCTTCCTCGCTGGAAACAGGCTTTGAAATGGATAATTTTTACCATATGGCGGCGTCGCCGACACAGGAGGCGGTGGCTGGCGGTGATTCAATGGCGGTTTGGTGGAGACAGAAACAAGGGGTGATGATAGGTTTGCCAACTAGGATTGCTCATGACGACTATAATTATAATGTTGATAATTATAATTGCACCACCACTCCGATTCCATTGATGGCGGTGACGCGCTCTTCGCCACCGTTGAGAGAAAGCTATTTCGGGCATGGCAGTAATACGAATGTGGAGATTTTTAGTGAAATGGGGGCGGGGAGTAGTCCACGGCCACCTTATCCGTTTTCATTATTGGAAGGTGGCTTTTAG 1047 0.4518 MEQNNVIAPFVMKTYHMVNDPITDNLITWGPTNNTFIVIDPLDFSQSLLPAFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEWFLRGQKHMLKNIVRRKHCSRSYNSKFSSISSSNSHLGKFEELNDEDMVMEITRLKEEQKALDEELQEMNKRLETTEKRPQQMMTFLCKVVEDPDVLSRTLIERERKQVVEKKRRLLSAATSSSSSSGMAIKTEFEEEETTVGNTILSSSLETGFEMDNFYHMAASPTQEAVAGGDSMAVWWRQKQGVMIGLPTRIAHDDYNYNVDNYNCTTTPIPLMAVTRSSPPLRESYFGHGSNTNVEIFSEMGAGSSPRPPYPFSLLEGGF 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0398 348 Coils Coil 135 162 - -
Lal8g0398 348 Gene3D - 2 100 IPR036388 -
Lal8g0398 348 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0398 348 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0398 348 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0398 348 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0398 348 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal8g0398 348 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 341 IPR027725 -
Lal8g0398 348 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Lal8g0398 348 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 8 341 - -
Lal8g0398 348 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0398 Lal-Chr8 2675506 2677142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0398 6 207 HSF AT3G24520 61.650 4.78e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal8g0398 HSF_DNA-bind 7.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0398 K09419 - gmx:100794896 338.961