Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0383 ATGTCTCTGCCATTAGAGCAAGGCTATGCAGCCTTATCATCAGAGCTTCCAACAATGGAAAAAACCTCTGAAAACTTTTCTCATACAACTAAAACCACCGGGACCAGTGGCTTAAACCTTAAGGCTACTGAACTAAGATTAGGCTTGCCTGGTTATGAGTCACCAGACAGAAATGAGAATAATGTTGTGTACCCTTTAAGCATGCACAACAAGTGTTTGGTTTCTGGTGCCAAAAGGGGTTTCTCAGATGCTATTGATGGTGGCTCTGGCAACTGGCTTCTCTCTGGGAATGATGGATCTGAGGTGGGTTTGAGTAAAGATGCTAACTTGTTCTCTCCCAGGGGTGTTACTGCTGCTAAGGCTCTTGTGGGAGCTGAGTGTATCAACCAACAAAAAGTATCTGTTTTGAAAGATAAAGTTCACTCTCCAAAACAATTGAATGAGAAGAAGCCTCAGATATCTGCTTCTCCTGCTAAGGAACAGGTTGTAGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTACTCATCCTCAAAAGAATGATGATGATGATACAGAATCCAAGTCCGGTTGCCTTTATGTAAAAATCAGCATGGATGGTGCTCCTTACTTGAGGAAAGTGGATCTCAAAATCTTTAGCACATACAGGGAACTATCTTCAGCACTGGAAAAGATGTTCAGTTGTTTTACAATCAGTGAGTTTTTTTCTACTAGTCAATGCGGTTCTCATAAGTTCAGTGAAAGCAGATTGATGGATCTTCTCCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGAGATGTTCACTGACTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGGTTTTGAGGCAAGGTCATCTCTTTGCATCTCAAGTTCCTTTTCCCTGTTCCTGATGGTCTCTGGAATATCTTCAATGGATACATACTGCACCTGGGGGCACGCCACAACTTGCATTGCAAGATCATCAACCAACTCTTTGAACTTTTCGCTTCTGCCAACAAAGTCAGTTTCACAGTTCACTTCGATTAGAACGCCGATGCGTGAATCATGA 1119 0.4272 MSLPLEQGYAALSSELPTMEKTSENFSHTTKTTGTSGLNLKATELRLGLPGYESPDRNENNVVYPLSMHNKCLVSGAKRGFSDAIDGGSGNWLLSGNDGSEVGLSKDANLFSPRGVTAAKALVGAECINQQKVSVLKDKVHSPKQLNEKKPQISASPAKEQVVGWPPIRSFRKNSMATHPQKNDDDDTESKSGCLYVKISMDGAPYLRKVDLKIFSTYRELSSALEKMFSCFTISEFFSTSQCGSHKFSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLGFEARSSLCISSSFSLFLMVSGISSMDTYCTWGHATTCIARSSTNSLNFSLLPTKSVSQFTSIRTPMRES 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0383 372 MobiDBLite consensus disorder prediction 14 35 - -
Lal8g0383 372 Pfam AUX/IAA family 43 303 IPR033389 -
Lal8g0383 372 MobiDBLite consensus disorder prediction 140 161 - -
Lal8g0383 372 ProSiteProfiles PB1 domain profile. 194 296 IPR000270 GO:0005515
Lal8g0383 372 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 306 IPR003311 GO:0005634|GO:0006355
Lal8g0383 372 SUPERFAMILY CAD & PB1 domains 191 295 - -
Lal8g0383 372 Gene3D - 188 308 - -
Lal8g0383 372 PANTHER AUXIN-RESPONSIVE PROTEIN 13 306 - -
Lal8g0383 372 MobiDBLite consensus disorder prediction 16 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0383 Lal-Chr8 2558377 2568044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0383 197 299 B3 DNA Binding Superfamily AT2G46530 31.068 9.27e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal8g0383 AUX_IAA 1.1e-82 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0383 8 2558377 2568044 Lal25g0428 25 2903576 2908285 LSH
Lal8g0383 8 2558377 2568044 Lal10g1020 10 17369097 17375552 LSH