Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0378 ATGGAACGCATCATCGGCGGCAAGTACAAGCTTGGCCGCAAGATCGGAAGCGGTTCCTTCGGTGAAATCTACCTCGCTACTCATATGGATACATTCGAGATCGTTGCTATCAAGATCGAGAATGGTAAAACAAAGCATCCGCAATTGCTTTATGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAAGTATAAAATGGTTTGGTGTAGATGCAGAGGACAATGCGCTTGTTATCGATTTGCTGGGTCCCAGCCTTGAGGATCTTTTTGTCTACTGTGGAAGAAAGTTCTCACTGAAGACAGTGTTGATGTTGGCTGATCAAATGATGAATAGAATAGAATATGTGCACTCAAAAGGATTCCTACACAGAGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTTTATATCATTGACTTTGGGCTTGCAAAACGATATCGGGAGTCCACAACCAATCGTCACATCCCTTATAGAGAGAATAAAAACTTAACAGGGACTGCACGTTATGCAAGTTGCAATACTCACCTTGGGATCGAGCAAAGCCGGCGGGATGATTTGGAGTCATTAGGATATGTGCTTTTGTACTTCCTAAGAGGAAGCCTTCCTTGGCAAGGTCTGAAGGCTGCTACAAAAAAGCAAAAGTATGATAAAATATGCGAGAAGAAAGTATCAACTCCTATTGAGGTGTTATGCAAATCTCACCCTGTAGAGTTCACTTCATACTTTCATTACTGTCATTCTCTGACCTTTGATCAGCGGCCTGATTATGGATTCTTGAAGCGCCTATTCCGGGAACTATTTACTCGAGAAGGTTATGAATTTGATTATGTATTTGATTGGACTATCTTAAAGTATCAGCAGTCGCAAAAGAACAGAGTCCAGCCTCACATATCTCCGGTCCTTGGAGCTAGCAACGGTCGTGCAATGCCAATGGATCTTGACAAACATCAAGGAGACGTCTCAGAGCGCATTAAGTCAGGCAATGCTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCATCGGGTAAAAATTTGGGTCCTGAAAGTCCTCTTGGCAAGAATATTTTTGGTGAAGCGGGTGTACCCTCTACTTCATTTTCTCTTGCTGGTACCTCAAGAAGGAACCCCTTGAAGCCTGCCTTGTCAACTGAAGCTTCCAACCATTTACATGGGCAAGGAAGTCCCTTCAAGTAG 1227 0.4311 MERIIGGKYKLGRKIGSGSFGEIYLATHMDTFEIVAIKIENGKTKHPQLLYEAKLYNILQGGSGIPSIKWFGVDAEDNALVIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMNRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYIIDFGLAKRYRESTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFTSYFHYCHSLTFDQRPDYGFLKRLFRELFTREGYEFDYVFDWTILKYQQSQKNRVQPHISPVLGASNGRAMPMDLDKHQGDVSERIKSGNATGSGVKIQFKSPSGKNLGPESPLGKNIFGEAGVPSTSFSLAGTSRRNPLKPALSTEASNHLHGQGSPFK 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0378 408 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lal8g0378 408 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g0378 408 MobiDBLite consensus disorder prediction 333 408 - -
Lal8g0378 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lal8g0378 408 MobiDBLite consensus disorder prediction 371 401 - -
Lal8g0378 408 Gene3D Transferase(Phosphotransferase) domain 1 1 326 - -
Lal8g0378 408 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 398 - -
Lal8g0378 408 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g0378 408 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lal8g0378 408 PANTHER CASEIN KINASE-RELATED 1 398 - -
Lal8g0378 408 MobiDBLite consensus disorder prediction 333 349 - -
Lal8g0378 408 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0378 Lal-Chr8 2532939 2539474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0378 9 230 EF-hand Containing Proteins AT3G20410 30.472 6.97e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lal8g0378 Pkinase 1.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0378 K08960 - gmx:100805890 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0378 8 2532939 2539474 Lal10g1022 10 17381156 17387325 LSH
Lal16g1067 16 7137482 7145199 Lal8g0378 8 2532939 2539474 PCT
Lal8g0378 8 2532939 2539474 Lal16g1067 16 7137482 7145199 PCT