Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0375 GTGGGGTTAAGAATGAGCAATAACATTGCCTCCAAAGCAGTGAAGAGGAAAACCAATCCTTCAATGGAACACAAATGTCAAAGCTGTGAAGCAGCATGGGTGGTTAATGGAGATGATCTTCTATCAAATTATACTAATGCTTTTCCTCATGGAATGAATTTAAAAACCATTTTAAGGTTCAAAGAGCTATTGAGGCAAATCAATATAAAACAACTTCAATTTAAAGAGATCCGTTCAACTCGACTGAAAATTGGGAAAGATGTTTTTGATTACCCAAGGTTCGCTGAGAGAAAGCAAGAATGTGATTTTTATAGTTTGGTATGCAATGACATTAGTGATGGACAAGAAGATAACACCATTTCTGTGATCAATGACTGTGATATCCCTCCTATTGCACCTCTTGGCTTCAAATATATGAAGCATATGCAAATTTGGAACAGAATCGAAGTTCCATCTAGGGTTGATGGATGCATGTGCAAAACAAATTGTACAATGACTTGTGCTTGTGTTCAGCTGAATGGGTCTGCTCCATATGTTTCAAAGAATGGTGGAAGACTGAAGGAAGCAAGAGATGTTGTGTTTGAATGTGGCCCTGAATGTGGATGTGGACCAGATTGTGGCAATAGAGTTTCCCAAAAGGGAATAAAGTACAAACTACAGGTTTTTTGTACACCTAACAAAGGTTGGGCTGTTAGAACACTAGAGACTATTCCGGCTGGTGCACCTGTTTGTGAATACATTGGTGTACTTAGGAGAAGTGATGAGGTAGACAATGACACTGGTAATAGCTACATCTTTGACATTGATTGTAAGCAAACAATTCATGGAATAGAAGGAAGAAAGAGAAGGTTAGGTCATGTGCCATTGCCTACGAACTCTCCAGTTGATGATAAGATAACAGAAAATGAAGCTGAGTTTTGCATTGATGGGAGCTCTTATGGTAATGTTGCTAGGTTTATCAACCACAGTTGTGAGCCAAACCTTTTTATTCAGTGTGTTCTAAGCGATCACACTGACATCAATCTAGCACGGGTAATGCTATTTGCTTCAAAAAAAATACCTCCACGCCAAGAACTTACGTATGACTATGGTTACCAACTTGATAGTGTTATGGGATCAGATGGAAATATCAAGAAAATGCCTTGTCATTGTGGTGCAGATTTATGCCGTAAACGCTTGTACTAG 1185 0.3873 VGLRMSNNIASKAVKRKTNPSMEHKCQSCEAAWVVNGDDLLSNYTNAFPHGMNLKTILRFKELLRQINIKQLQFKEIRSTRLKIGKDVFDYPRFAERKQECDFYSLVCNDISDGQEDNTISVINDCDIPPIAPLGFKYMKHMQIWNRIEVPSRVDGCMCKTNCTMTCACVQLNGSAPYVSKNGGRLKEARDVVFECGPECGCGPDCGNRVSQKGIKYKLQVFCTPNKGWAVRTLETIPAGAPVCEYIGVLRRSDEVDNDTGNSYIFDIDCKQTIHGIEGRKRRLGHVPLPTNSPVDDKITENEAEFCIDGSSYGNVARFINHSCEPNLFIQCVLSDHTDINLARVMLFASKKIPPRQELTYDYGYQLDSVMGSDGNIKKMPCHCGADLCRKRLY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0375 394 SMART preset_2 108 201 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal8g0375 394 ProSiteProfiles Pre-SET domain profile. 155 214 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal8g0375 394 ProSiteProfiles Post-SET domain profile. 378 394 IPR003616 -
Lal8g0375 394 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 18 393 - -
Lal8g0375 394 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 18 393 - -
Lal8g0375 394 SMART set_7 217 370 IPR001214 GO:0005515
Lal8g0375 394 SUPERFAMILY SET domain 106 371 IPR046341 -
Lal8g0375 394 Gene3D SET domain 102 394 IPR046341 -
Lal8g0375 394 ProSiteProfiles SET domain profile. 217 364 IPR001214 GO:0005515
Lal8g0375 394 Pfam SET domain 228 364 IPR001214 GO:0005515
Lal8g0375 394 Pfam Pre-SET motif 111 209 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0375 Lal-Chr8 2516088 2519698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0375 17 394 EF-hand Containing Proteins AT5G13960 47.287 3.81e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal8g0375 SET 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0375 - K11420 lang:109347435 485.337