Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0372 ATGGGTGAGGCACGTAGTTCAGAAAGTGAAACAAGAAGCAATAACTACTCTTCTTCTTCTTCTTCTTCAACTTCAAAAACTCAACAGAAGAAGCGATCAAGAGAGAATAGCAACACCAAGCATCCAATATACAGAGGAGTCCGAATGCGCGCGTGGGGAAAATGGGTATCCGAAATCCGTCAGCCGCGAAAGAAGAACAGAATCTGGCTCGGTACCTTTGCCACCCCCGATATGGCGGCGCGTGCACACGACGTCGCTGCTCTAACCATCAAGGGTTCCTCCGCGATCCTTAATTTCCCAGAACTCGCTCCTTTGTTGCCCCGTCCAGCTTCAAACTCGCCACAAGATGTTCAAGCCGCCGCCACTAAAGCCGCATCTATGGAGCTTCCTCCTCCAGTGGTGTCTCAGTCATCATCGCCGCCCCTTTCATCGTCTACTTCTTCTACGGTGGCGGCGGATGAAGAAGAAGAACTGGGTGAGATAGTGGAGCTACCAATGTTGGGTAGTAGTTTTGAATCACCGGAGCCAGTTAACGAGTTTGTGTTTATTGACCCAGTTGATGGGTGGCCATATCCTCAACCATGGTTTTATAGCATTTATGATGAACATGATATAATAATATCAGAAAGTAGGGTTCTATGTGGCCTTGACAGTTCTTTCTGGCTGTGA 669 0.4828 MGEARSSESETRSNNYSSSSSSSTSKTQQKKRSRENSNTKHPIYRGVRMRAWGKWVSEIRQPRKKNRIWLGTFATPDMAARAHDVAALTIKGSSAILNFPELAPLLPRPASNSPQDVQAAATKAASMELPPPVVSQSSSPPLSSSTSSTVAADEEEELGEIVELPMLGSSFESPEPVNEFVFIDPVDGWPYPQPWFYSIYDEHDIIISESRVLCGLDSSFWL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0372 222 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Lal8g0372 222 MobiDBLite consensus disorder prediction 7 27 - -
Lal8g0372 222 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Lal8g0372 222 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Lal8g0372 222 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Lal8g0372 222 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Lal8g0372 222 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Lal8g0372 222 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Lal8g0372 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 205 - -
Lal8g0372 222 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 205 - -
Lal8g0372 222 MobiDBLite consensus disorder prediction 138 152 - -
Lal8g0372 222 CDD AP2 42 102 IPR001471 GO:0003700|GO:0006355
Lal8g0372 222 MobiDBLite consensus disorder prediction 1 44 - -
Lal8g0372 222 MobiDBLite consensus disorder prediction 108 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0372 Lal-Chr8 2498798 2499466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0372 15 208 AP2-EREBP Transcription Factor Family AT5G11590 55.340 1.46e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal8g0372 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0372 K09286 - gmx:100804801 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1072 16 7169028 7169774 Lal8g0372 8 2498798 2499466 PCT
Lal23g0601 23 8796188 8796895 Lal8g0372 8 2498798 2499466 PCT
Lal8g0372 8 2498798 2499466 Lal16g1072 16 7169028 7169774 PCT
Lal8g0372 8 2498798 2499466 Lal23g0601 23 8796188 8796895 PCT