Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0340 ATGAGGAAGCCAGAGCAGTGTGGTAAGAACAACAACAGCAATAAGCTTAGGAAAGGGTTGTGGTCACCAGAAGAAGATGAAAAGCTCATGAACTACATAATAAACAATGGACAAGGTTGTTGGAGCGATGTAGCAAGAAATGCTAGCTTGCAAAGGTGTGGCAAAAGTTGTCGACTTAGATGGATTAATTATTTGAGGCCTGATCTTAGAAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCATTTGCATTCCCTTCTTGGCAACAGATGGTCTCAAATAGCAGCACGTTTGCCCGGAAGAACTGATAATGAAATCAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTGAAGAACATCAACATTTCAACTACCACAACCTCAGCTTCACCAAAAGTATGCAACCCACAGTCTCATGAGCTTAACAAAGACCACAACAACATGGGAGGGTTTATTTCTACGCAACATAATCAACATGCAGGATTCATGCCTATATTCACTTCATCTCTATCATCATCAATGCAAACAACAATTGTCAACACCATTAATATTGAAGGATTGCCTGTGCTAGATCATGGACTAAACATGCAAGTTGATGGAGGATATTTTAACAGCACAGGGCAATGCTTTGATGATAATAACAAAGGTTTTTATTTAGAAAATGATGGGATATTTGGGAGTGTAAATAATATTGGGATAGAAGGGGATATGTTTGTTCCTCATCTAGAGAGTGTTAATACTACTATTACTACTGATCAAAATAACCATCAGAGAGTAGTGGACAATATAACTTGCAAGAGAGAAACTAACAATAATAGTACTTACTTTGATGACATAAACAGCATCCTTAATAACTGCAATGTTAGCAACAATAAGAAAAGTGAAAATAGGGTTGGGGTGGGGAATTTATTTCAAGAAGAGTTAACCATAGGAGAGTGGGACTTGGAGGAGTTGATGAAAGATGTTTCCTATTTTCCGTTTGTTGACTTTTCTTGA 1005 0.3751 MRKPEQCGKNNNSNKLRKGLWSPEEDEKLMNYIINNGQGCWSDVARNASLQRCGKSCRLRWINYLRPDLRRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNINISTTTTSASPKVCNPQSHELNKDHNNMGGFISTQHNQHAGFMPIFTSSLSSSMQTTIVNTINIEGLPVLDHGLNMQVDGGYFNSTGQCFDDNNKGFYLENDGIFGSVNNIGIEGDMFVPHLESVNTTITTDQNNHQRVVDNITCKRETNNNSTYFDDINSILNNCNVSNNKKSENRVGVGNLFQEELTIGEWDLEELMKDVSYFPFVDFS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0340 334 Gene3D - 72 148 - -
Lal8g0340 334 MobiDBLite consensus disorder prediction 1 20 - -
Lal8g0340 334 SMART sant 70 118 IPR001005 -
Lal8g0340 334 SMART sant 17 67 IPR001005 -
Lal8g0340 334 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Lal8g0340 334 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Lal8g0340 334 CDD SANT 21 65 IPR001005 -
Lal8g0340 334 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Lal8g0340 334 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Lal8g0340 334 PANTHER MYB DOMAIN PROTEIN 55 7 258 - -
Lal8g0340 334 PANTHER MYB DOMAIN PROTEIN 55 263 334 - -
Lal8g0340 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Lal8g0340 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Lal8g0340 334 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Lal8g0340 334 CDD SANT 73 113 IPR001005 -
Lal8g0340 334 PANTHER MYB TRANSCRIPTION FACTOR 263 334 - -
Lal8g0340 334 PANTHER MYB TRANSCRIPTION FACTOR 7 258 - -
Lal8g0340 334 Gene3D - 15 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0340 Lal-Chr8 2305623 2307775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0340 1 333 MYB Transcription Factor Family AT3G08500 45.225 8.59e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal8g0340 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0340 K09422 - gmx:100785810 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0340 8 2305623 2307775 Lal8g0340 8 2305623 2307775 ECH
Lal8g0340 8 2305623 2307775 Lal1g0303 1 1836739 1840125 PCT
Lal8g0340 8 2305623 2307775 Lal9g0205 9 1278278 1281142 PCT
Lal1g0303 1 1836739 1840125 Lal8g0340 8 2305623 2307775 PCT
Lal9g0205 9 1278278 1281142 Lal8g0340 8 2305623 2307775 PCT