Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0329 ATGGATGACTCAAACAAATGGCTTTATTTCTGTAACAATTTCATCCCTCTTTCTCCCACTTATCCTTCATTACCACCTCAATTTCAAGAATCTGAACCTCATAACCCGTTCTCTCTTGGGACCTCAGTAAATGAAAACATGGAAAGCTTTTTCCAAAATTATGACTGGACTCTAATTAATTCTCCCAGCAACAACGAAATTCCAAATGCTGCAGATTTTTTTGATGTGAGAAGCACTGAAAATCACTCTGATCTTATACCCATAAATGAGATTCAGTCATATGATTCAGATAATCTCTTCACAAACAACAATGAAGCTGTAGTGCCAATGCTGAATTCAGTGGTTGCAGCTAACTCTAGCAACCATGAATATCAAGAAAACAATGCTAACAATAATACGGAGTCATTAACATCATCCATGGGAAATGGTGGTAATAAGGATTCAACAAACAAAACAAATGGTGATAGTAGTACAAGAAATAACGTTGAAGCTACACGTAAGAGAACTTCTCATAACTCTGGTAAGACAAAAGCATTATATCGTGGTGTAACAAGGCATGTATCAACTGGAAGGTATGAAGCCCACCTTTGGGATAGTAGCATTAAAAGGGAAGGACAATCAAAAAAAGGTTACCAAGGTGGGTATGACACAGCAGAGAAAGCAGCGAGGGCCTATGATTTAGCTGCCCTAAAGTACTGGGGGGAATCTACCACTATCAATTTCCCTATTGGTAACTATGAGAAGGAGTTGGAAGAAATGAAGAACATGACCAAACATGATTTTGTGGCCGCAATTAAAAGGAAGAGTAGTGGATTCTCTAGGGGTGCATCAATGTATCGTGGAGTCACAAGGCATTACCAAAATGGAAAATGGCAAGCGAAGATGGGCAAGGTTGTTGAAGGGAAAGATCTTTACTTGGGAACGTTTAATACCGAGGAAGATGCAGCAAGAGCCTATGATATCGCTGCAATAAAATTTAGAGGCCCTAACGCGATGACCAATTTTGATATCAGTCATTACGATGTGAAAACTATTATTGAAAGCAGAACTCTCTCAATAAGAGGTGGAGCTTCTAAAAGACTAAATGGGTATATCAACATAGGCTCTTCTTCCTCCATAATGGACAACAATGGTGGTGATTCTAGTCATTGGAATGATAACGGAGCTGGTTTTACAGGGAATAACAATGATCTAGTTGAAATGACTTCAAATTCTTCATTATCTGTGATGGACAACAATGGTGGTGATTCTGATAATTGGAATTATAATGGAGCTGATTTTATTGGGAACAATAATGGCCTAGTTGAAATGACTTCAAATTCTTCATTATCTGTGATGGACAACAATGGTGGTAATTTTGATAATTGGAATTATAATGGAGCTGATTTTATTGGGAATAAGAATGGCCTAGTTGAAATGACTTCAAATTCTTCATTATCTGTGATGAACAGCAATGGTGGTGATTATAATCATTGGAATTATAATGGAACTGATTTTATAAGGAATAACAATGAGCTAGTTGAAATGACTTCGAGTTCTCCATTATATGTGATGGACAACAATGATGGTGATTCTAATCATTGGAATTATAGTGGAGCTGGTTTTACAGGGAATAACAATGACATAGTTGAAATGATTTCAAATTCTTCATCATCAGTGATGGACAACAATGGTGGTTATTCTAATCATTATTGGAATTATAATGGAGCTAGTTTTATAGGGAATAACAATGGCCTAGTTGAAATGACTTCAAACTCTTCATCATTTGTGATGGACAACAATGGTGGTTATTCTAATCATTGGAATTATAATGGAGCTGGTTTTATAGGGAATAACAATGGGCTAGTTGAAATGACCTCAAATTATTCATCATGTGTGATAGACAACAATGGAGGTGATGATTCTAACAATGACCTTTTTGGAATGGCTTTAAATTCTTCAGCATCTGTGATGGACAACAATGGTGGTGATTATAATCATTGGAATTATAATGGAGCTGATTATATAGGTAATAACAATGACCTAGTTGGAATGACTTCAAATTCTTCTTCATCTTTGATAGACAACAATGGTGGTGGTGGTTCTAACAATGCCCTTTTTGGAATGACTTTAAATTCTTCTTTGAGTGAAGAGGATAAGTTATCACTTATGGTTGATTATGACATTGCTACTAAAGGATATAGCGGCTGGTTGACGAATTCCATTAATGCTTGGAATGTTGATTTTACAAAGTGGCCGTGA 2241 0.3637 MDDSNKWLYFCNNFIPLSPTYPSLPPQFQESEPHNPFSLGTSVNENMESFFQNYDWTLINSPSNNEIPNAADFFDVRSTENHSDLIPINEIQSYDSDNLFTNNNEAVVPMLNSVVAANSSNHEYQENNANNNTESLTSSMGNGGNKDSTNKTNGDSSTRNNVEATRKRTSHNSGKTKALYRGVTRHVSTGRYEAHLWDSSIKREGQSKKGYQGGYDTAEKAARAYDLAALKYWGESTTINFPIGNYEKELEEMKNMTKHDFVAAIKRKSSGFSRGASMYRGVTRHYQNGKWQAKMGKVVEGKDLYLGTFNTEEDAARAYDIAAIKFRGPNAMTNFDISHYDVKTIIESRTLSIRGGASKRLNGYINIGSSSSIMDNNGGDSSHWNDNGAGFTGNNNDLVEMTSNSSLSVMDNNGGDSDNWNYNGADFIGNNNGLVEMTSNSSLSVMDNNGGNFDNWNYNGADFIGNKNGLVEMTSNSSLSVMNSNGGDYNHWNYNGTDFIRNNNELVEMTSSSPLYVMDNNDGDSNHWNYSGAGFTGNNNDIVEMISNSSSSVMDNNGGYSNHYWNYNGASFIGNNNGLVEMTSNSSSFVMDNNGGYSNHWNYNGAGFIGNNNGLVEMTSNYSSCVIDNNGGDDSNNDLFGMALNSSASVMDNNGGDYNHWNYNGADYIGNNNDLVGMTSNSSSSLIDNNGGGGSNNALFGMTLNSSLSEEDKLSLMVDYDIATKGYSGWLTNSINAWNVDFTKWP 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0329 746 ProSiteProfiles AP2/ERF domain profile. 278 336 IPR001471 GO:0003700|GO:0006355
Lal8g0329 746 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 13 513 - -
Lal8g0329 746 SMART rav1_2 179 248 IPR001471 GO:0003700|GO:0006355
Lal8g0329 746 SMART rav1_2 278 342 IPR001471 GO:0003700|GO:0006355
Lal8g0329 746 MobiDBLite consensus disorder prediction 124 160 - -
Lal8g0329 746 Gene3D AP2/ERF domain 179 244 IPR036955 GO:0003700|GO:0006355
Lal8g0329 746 Gene3D AP2/ERF domain 278 338 IPR036955 GO:0003700|GO:0006355
Lal8g0329 746 CDD AP2 277 338 IPR001471 GO:0003700|GO:0006355
Lal8g0329 746 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 513 - -
Lal8g0329 746 ProSiteProfiles AP2/ERF domain profile. 179 242 IPR001471 GO:0003700|GO:0006355
Lal8g0329 746 CDD AP2 180 243 IPR001471 GO:0003700|GO:0006355
Lal8g0329 746 SUPERFAMILY DNA-binding domain 179 243 IPR016177 GO:0003677
Lal8g0329 746 SUPERFAMILY DNA-binding domain 277 338 IPR016177 GO:0003677
Lal8g0329 746 MobiDBLite consensus disorder prediction 124 176 - -
Lal8g0329 746 Pfam AP2 domain 279 328 IPR001471 GO:0003700|GO:0006355
Lal8g0329 746 Pfam AP2 domain 180 235 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0329 Lal-Chr8 2230629 2235012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0329 3 361 AP2-EREBP Transcription Factor Family AT1G51190 55.584 3.93e-123 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal8g0329 AP2 4.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0329 K09285 - gmx:100788471 429.483