Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0328 ATGGAGTCAGATCTTGAACAACAGCAGCATCAGGTAAATAATTCTTCATCTGGTTTAACACGTTACAAATCAGCACCAAGCTCCTATTTTACCAATATCATTGACAAGGACTTCTATGAGCACATTTTCAATCACCCCTCAAGCCCTGAAACAGAACAAATCTTCTCACGCTTTATGAATAGTATAGGTGGTGGTGATGTTACTCCTGCAGCAGAAGAAATTTCACTCACTCAGAATTTATCACCAGTGAAGGAAGAAATTATTATTAACCAGCAGTGGAAGGAACAACAACAGCATAGTGATATTAATAATAATAATTATTCCCATGTTGCTGCTTCTACTCATGGTTTTTACCAAAGCTCTTCAAAACCACCTTTGCCAAATCAGAATCTTAACTCAGCCCATGCTGGCATCAGAGGCATGGGAAATTTAGGAGCAGCTGGTAGTAACACTATGGAAGATAGGTTGAAGAATCAACCAAACCCATCATTAGGGCTAATGTCAGCAATAGCTGAAATTGAGGGCAAGGGAAATAGAGAAAACAATGGCAATGAAGGTTTTGATGAAAGCAATGACAATGATTTTATTACAGGTTTCCCTGCTGATCCTTGGGTTGATTCTGCAATCATGCCTGACAATGTTACTTGTTTAAAAAGACACAGAGAGAATGATTCAAAACCATTTTCTAGTTTAAATGCAGCTGAGACTCAGAATGAAAAAGGACATACTCCTTTGGTTCATCAGTTGAGTATGCCAAATACTTCATCTGAAATGGCAGCATATGAGAAGTTTCTGCAGTTTTCAGATTCTGTTCCATGCAAAACTCGTGCCAAGCGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAACGTATGAGGAAACTACAAGATCTAGTCCCAAACATGGACAAGCAAACAAATACAGCAGACATGTTGGATTTAGCTGTTCATTATATCAAAAACCTTCAAAAGGAAGTTAAGGTTCTTTCAGAATGTCAGTCTAAGTGTAAGTGTTCACAAAAGCAGGAGCAATAA 1062 0.3851 MESDLEQQQHQVNNSSSGLTRYKSAPSSYFTNIIDKDFYEHIFNHPSSPETEQIFSRFMNSIGGGDVTPAAEEISLTQNLSPVKEEIIINQQWKEQQQHSDINNNNYSHVAASTHGFYQSSSKPPLPNQNLNSAHAGIRGMGNLGAAGSNTMEDRLKNQPNPSLGLMSAIAEIEGKGNRENNGNEGFDESNDNDFITGFPADPWVDSAIMPDNVTCLKRHRENDSKPFSSLNAAETQNEKGHTPLVHQLSMPNTSSEMAAYEKFLQFSDSVPCKTRAKRGFATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVHYIKNLQKEVKVLSECQSKCKCSQKQEQ 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0328 353 Pfam Helix-loop-helix DNA-binding domain 287 332 IPR011598 GO:0046983
Lal8g0328 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 331 IPR011598 GO:0046983
Lal8g0328 353 MobiDBLite consensus disorder prediction 1 21 - -
Lal8g0328 353 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 132 350 - -
Lal8g0328 353 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 9 130 - -
Lal8g0328 353 SMART finulus 287 337 IPR011598 GO:0046983
Lal8g0328 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 346 IPR036638 GO:0046983
Lal8g0328 353 Gene3D - 282 353 IPR036638 GO:0046983
Lal8g0328 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 132 350 - -
Lal8g0328 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 9 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0328 Lal-Chr8 2219587 2223807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0328 1 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 34.223 3.82e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal8g0328 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0328 - - lang:109358074 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0328 8 2219587 2223807 Lal8g0328 8 2219587 2223807 ECH