Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0315 ATGGATTCCGAGGATGATATGCACGATGCCAACGATGTGGAGTCTCTTGATGACGATTTCTACAGTGGCGAAACCGAAGATGCTCCCATGGATTACTACACCGACTACGATGATGATGATGCCGATGATTACTTTGACGACGGTGATGATTCGGATAGGCTTCAGTCTCGTCGCCCTGAGCAAAATTTCGCCATATTGAAGGAATCAGATATCCAGCAAAGGCAGGAAGATGACATCAATAGGGTAGCTGCAGTTCTTTCAATATCACGGGTTTCTGCGAGCATCCTACTTCGTAATTACAATTGGAGTGTCACTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCAAGTCCGGAAGAAAGTTGGTTTGTTGGAGAAGCCTGTTGTCCAGCATCCCAATGCTAGAGAGCTTACTTGCGGCATCTGTTTTGAAACGTATCCTCATGCTAGGATTGAAACTGCTCCTTGTGGTCATCCCTACTGTATTTCATGTTGGGAAGGATATATTAGCACATCCATTAATGACGGTCCTGGATGTTTGACACTGAGATGTCCTGATCCCATTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGTATCCGATGAAGACAAAGAAAAGTATGACCGTTACCTTCGCCGGTCTTATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGGAAATTATGATGTGTCTTGCCTTTGCTCATATAGCTTTTGCTGGAATTGCATTGAGGAGGCTCATCGTCCGGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAAGGATGCATGCACATTACTTGTACACCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAACCGTTATGAGACAGCTAAACAAGAGGGGGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCTAGGCAAAAAGCTCTTTCAGATCTGCACCAGATGCAAACTATTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATTACCGAGGCTTGGCTACAGATAGTTGAATGCAGGCGGGTATTGAAGTGGACGTATGCATATGGGTATTATTTACCTGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACCTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAGTGCGCCGAAAAGGAACTGCAGGTATTCCTTAATGCTGAATGCCCATCAAGAGAGTTTAACGACTTCCGCACAAAACTAGCTGGATTGACAAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATTGTTTATCTGACGTGGATAGTAATGGAGCTAATTCCAGCAAAGCAACGAGCTCAAAAAACGCTGCAGGGTGCAGTAAGAAAGGTGGAAGAGGAAAGGGCACTATTCGAGCAAGCATGTCCAGCAGAATTACTGACGATGATCTTTGGTCGTGTGAACATTGTACCTATGCAAATGTCAAATCTGCCACTACATGCCAGATGTGCAATCAACAGCCTCCATGA 1773 0.4354 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYTDYDDDDADDYFDDGDDSDRLQSRRPEQNFAILKESDIQQRQEDDINRVAAVLSISRVSASILLRNYNWSVTKVHDAWFADEDQVRKKVGLLEKPVVQHPNARELTCGICFETYPHARIETAPCGHPYCISCWEGYISTSINDGPGCLTLRCPDPICGAAVGQDMINLLVSDEDKEKYDRYLRRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCIEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALSDLHQMQTIHIEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNAECPSREFNDFRTKLAGLTSVTRNYFENLVRALENCLSDVDSNGANSSKATSSKNAAGCSKKGGRGKGTIRASMSSRITDDDLWSCEHCTYANVKSATTCQMCNQQPP 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0315 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 224 IPR013083 -
Lal8g0315 590 Gene3D - 267 522 - -
Lal8g0315 590 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Lal8g0315 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 538 IPR031127 GO:0004842|GO:0016567
Lal8g0315 590 Pfam IBR domain, a half RING-finger domain 288 336 IPR002867 -
Lal8g0315 590 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Lal8g0315 590 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 538 - -
Lal8g0315 590 Pfam Ariadne domain 358 518 IPR045840 -
Lal8g0315 590 SMART zf_4 564 588 IPR001876 -
Lal8g0315 590 SUPERFAMILY RING/U-box 290 338 - -
Lal8g0315 590 SUPERFAMILY RING/U-box 209 278 - -
Lal8g0315 590 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Lal8g0315 590 MobiDBLite consensus disorder prediction 525 554 - -
Lal8g0315 590 MobiDBLite consensus disorder prediction 1 58 - -
Lal8g0315 590 SMART ibrneu5 275 345 IPR002867 -
Lal8g0315 590 SMART ibrneu5 209 271 IPR002867 -
Lal8g0315 590 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Lal8g0315 590 SUPERFAMILY RING/U-box 136 221 - -
Lal8g0315 590 MobiDBLite consensus disorder prediction 1 49 - -
Lal8g0315 590 SUPERFAMILY Ran binding protein zinc finger-like 563 587 IPR036443 -
Lal8g0315 590 ProSitePatterns Zinc finger RanBP2-type signature. 566 585 IPR001876 -
Lal8g0315 590 MobiDBLite consensus disorder prediction 525 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0315 Lal-Chr8 2111474 2118469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0315 17 585 ARIADNE family AT1G65430 71.728 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0315 K11968 - gmx:100810427 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0376 25 2509417 2521006 Lal8g0315 8 2111474 2118469 LSH
Lal10g1061 10 17628152 17636128 Lal8g0315 8 2111474 2118469 LSH
Lal8g0315 8 2111474 2118469 Lal1g0289 1 1713368 1719496 PCT
Lal8g0315 8 2111474 2118469 Lal2g0183 2 1076480 1082755 PCT
Lal8g0315 8 2111474 2118469 Lal9g0186 9 1154214 1160587 PCT
Lal1g0289 1 1713368 1719496 Lal8g0315 8 2111474 2118469 PCT
Lal2g0183 2 1076480 1082755 Lal8g0315 8 2111474 2118469 PCT
Lal9g0186 9 1154214 1160587 Lal8g0315 8 2111474 2118469 PCT