Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0308 ATGAAAATTCAGTGTGATGTGTGTGAGAAGGCTCCAGCAACTTTGATTTGTTGTGCAGATGAGGCTGCTTTGTGTGCAAAATGTGATGTTGAAGTTCATGCTGCAAATAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATCTCTATCAAACAAGCTTCCTAGATGTGATATATGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTATTCTGTCAGGATTGTGATGAACCAATTCATTCAGCTGGCACCATTTCTGCAAGCCATCAGCGCTTCCTTGCGACTGGTATCCGAGTTGCCTCGAGTTCTAATTGCACCAAACACAATGAAAAAAGTCACTCAGAGCCATCTAATAAGAATGCACAATTAGTTTCTGTTAAAGTTCCATCTCAGCAAGTCCCTACCTTCACACCCTCTTGGGCTGTTGATGACTTATTGGAGTTAACAGACTTCGAATCGAACGACAAATTTGGAGAGCTGGAATGGCTGCAAGAAGGTCTTTTTGGTGAACAATTTCCTCATGAAGCTTTGGCTGCAGCTGAAGTCCCTCAGCTTCCACCAACACATATTAGCACCAATGTTGCCTCATACAAGTCCTACTTGTCTCACAAAAAACCGAGGATCGAAGTCCAATATAATGATGATGACGATGAGGACGACGACGAGTTCTTCACTGTGCCTGATCTTGGTTGA 708 0.4308 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLLLQSLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGTISASHQRFLATGIRVASSSNCTKHNEKSHSEPSNKNAQLVSVKVPSQQVPTFTPSWAVDDLLELTDFESNDKFGELEWLQEGLFGEQFPHEALAAAEVPQLPPTHISTNVASYKSYLSHKKPRIEVQYNDDDDEDDDEFFTVPDLG 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0308 235 CDD Bbox1_BBX-like 57 98 - -
Lal8g0308 235 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 235 - -
Lal8g0308 235 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 235 - -
Lal8g0308 235 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lal8g0308 235 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lal8g0308 235 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Lal8g0308 235 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lal8g0308 235 Gene3D Classic Zinc Finger 1 92 - -
Lal8g0308 235 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal8g0308 235 MobiDBLite consensus disorder prediction 214 235 - -
Lal8g0308 235 CDD Bbox1_BBX-like 5 47 - -
Lal8g0308 235 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lal8g0308 235 MobiDBLite consensus disorder prediction 218 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0308 Lal-Chr8 2067235 2069726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0308 1 161 Orphan Transcription Factor Family AT1G06040 63.529 1.58e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lal8g0308 zf-B_box 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0308 - - gmx:100797515 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0366 25 2483533 2485975 Lal8g0308 8 2067235 2069726 LSH
Lal8g0308 8 2067235 2069726 Lal2g0174 2 1038706 1045638 PCT
Lal8g0308 8 2067235 2069726 Lal9g0184 9 1144204 1149069 PCT
Lal2g0174 2 1038706 1045638 Lal8g0308 8 2067235 2069726 PCT
Lal9g0184 9 1144204 1149069 Lal8g0308 8 2067235 2069726 PCT