Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0296 ATGGAAGCGCCAGGTAGGTCAGTTGAAGAAATATTCGAAGATTTCAGAGGCCGTAGAGCTGCCATCATCAAAGCCCTCACCACTGATGTTGCAGATTTCTACAGCCAATGTGATCCTGAAAAGGAGAATTTGTGCTTATATGGATTACCTAACGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTGTCTTTAGTTGCTGTTCATAGTGATAGTTGGTTGCTTGCCCTTGCCTTCTATTTTGGTGCCAGATTTGGTTTCGACAAAACTGACAGGAGACGACTATTCAACATGATGAATGACCTACCAACAATATTTGAAGTTGTTACTGGTACTGCAAAGAAACAAGTTAAAGAGAAGTCTTCGGTTTCAAACAACAGTGGCAGCAAATCCAAGTCCAGCTCTAAAGTGCGAGCTCCTGAGGCCCAGGGTAGGCAGTCAAAACCGTTTCCACCAAGAGATGAGGACGAAGAAGTGGAAGAGCAAGAGGAAGATGAACATGGGGACACCTTGTGTGGGGCATGCGGTGAGAATGATGGTATTGATGAGTTCTGGATTTGCTGTGATATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAAGATCACCCCGGCTAGGGCAGATCATATCAAGCATTACAAGTGCCCATCATGCAGCAGTAACAAAAGAGCTCGTTAA 750 0.4533 MEAPGRSVEEIFEDFRGRRAAIIKALTTDVADFYSQCDPEKENLCLYGLPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLALAFYFGARFGFDKTDRRRLFNMMNDLPTIFEVVTGTAKKQVKEKSSVSNNSGSKSKSSSKVRAPEAQGRQSKPFPPRDEDEEVEEQEEDEHGDTLCGACGENDGIDEFWICCDICERWFHGKCVKITPARADHIKHYKCPSCSSNKRAR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0296 249 SUPERFAMILY FYVE/PHD zinc finger 185 245 IPR011011 -
Lal8g0296 249 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 249 - -
Lal8g0296 249 MobiDBLite consensus disorder prediction 141 165 - -
Lal8g0296 249 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Lal8g0296 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Lal8g0296 249 Pfam PHD-finger 196 244 IPR019787 -
Lal8g0296 249 PANTHER CPG BINDING PROTEIN 1 249 IPR045104 GO:0006355|GO:0042393
Lal8g0296 249 CDD PHD_AL_plant 195 245 IPR044104 -
Lal8g0296 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Lal8g0296 249 MobiDBLite consensus disorder prediction 141 189 - -
Lal8g0296 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Lal8g0296 249 SMART PHD_3 195 243 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0296 Lal-Chr8 1986896 1990757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0296 6 249 Alfin-like Transcription Factor Family AT3G42790 73.770 1.28e-121 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal8g0296 Alfin 1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0296 - - gmx:100170696 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1508 17 16461772 16466748 Lal8g0296 8 1986896 1990757 ECH
Lal4g1532 4 19424366 19428781 Lal8g0296 8 1986896 1990757 ECH
Lal8g0296 8 1986896 1990757 Lal8g0296 8 1986896 1990757 ECH
Lal25g0350 25 2374991 2377996 Lal8g0296 8 1986896 1990757 LSH
Lal10g1079 10 17747486 17751145 Lal8g0296 8 1986896 1990757 LSH
Lal8g0296 8 1986896 1990757 Lal20g1047 20 14332126 14339713 PCT
Lal8g0296 8 1986896 1990757 Lal18g0134 18 1085727 1090731 PCT
Lal20g1047 20 14332126 14339713 Lal8g0296 8 1986896 1990757 PCT
Lal18g0134 18 1085727 1090731 Lal8g0296 8 1986896 1990757 PCT