LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0292	ATGGGAAATCAGAAGCAAAAATGGACAGCGGATGAAGAAGACGCTCTCCACCGCGGAGTTCAGAAGTACGGCGCCGGAAAGTGGAAGAACATCCTCAAAGATCCCGATTTTGCCCCTTTCCTTACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGCGTAATTTGAATGTTAGCAATGGTCAAGGTCTCCCTAAAGATAAATCCAGAACTCCTAAGCCCAAATCAATTCTTCCTCCTCCTCCTTCTTCTTCTTCACTTATTGCTGCTCCACAAAATGCTCTTTCTATTCCTCGGGATAAAATTGTTCATGATCTTCCTATTGCTGAAGATTCCAACAATCCTTCTCGGTACAATGCAATGGTTTTTGAAGCTCTGTCAACAATCAAAGATGCTAATGGTTCTGACGTAAGTGCTATTCTTAGTTTCATCGAGCAAAAGCACCAGGTTCCTTCAAATTTCAAAAGAGCATTAAGTACAAGGTTGAAGAGGCTTGTTAATCAAGGGAAACTTGAAAAGGTACAAAATGGTTACATTATGAAGGACGCCCCAAGTGTAATGAAATCACCATCGCCATCACCAAAACCAAAGGATGCATGGCCACGGCAATCACCACCCTCTAGTATTTTATCATGCAGTGAGACAGCAAGGGAAGCTGCCGCTACTGCAGCCTACAGAATTGCAGAGGCTGAGAATAAAGCATTTTTGGCTGCTGAGGCATTTAAGGAAGTGGATAGACTCTCACAGATGGCTGAAGAAAATGAGGTAGTGTTACGGTTGGTGACAGAGATGTATGAACAAAGTACGTAG	810	0.4309	MGNQKQKWTADEEDALHRGVQKYGAGKWKNILKDPDFAPFLTSRSNIDLKDKWRNLNVSNGQGLPKDKSRTPKPKSILPPPPSSSSLIAAPQNALSIPRDKIVHDLPIAEDSNNPSRYNAMVFEALSTIKDANGSDVSAILSFIEQKHQVPSNFKRALSTRLKRLVNQGKLEKVQNGYIMKDAPSVMKSPSPSPKPKDAWPRQSPPSSILSCSETAREAAATAAYRIAEAENKAFLAAEAFKEVDRLSQMAEENEVVLRLVTEMYEQST	269

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal8g0292	269	Gene3D	-	111	198	IPR036388	-
	Lal8g0292	269	PANTHER	SINGLE MYB HISTONE 4	1	267	IPR044597	GO:0003691
	Lal8g0292	269	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	61	IPR017930	-
	Lal8g0292	269	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	114	190	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lal8g0292	269	SUPERFAMILY	"Winged helix" DNA-binding domain	117	180	IPR036390	-
	Lal8g0292	269	CDD	SANT_TRF	6	57	-	-
	Lal8g0292	269	MobiDBLite	consensus disorder prediction	55	88	-	-
	Lal8g0292	269	Pfam	linker histone H1 and H5 family	117	176	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lal8g0292	269	Pfam	Myb-like DNA-binding domain	5	56	IPR001005	-
	Lal8g0292	269	MobiDBLite	consensus disorder prediction	182	210	-	-
	Lal8g0292	269	CDD	H15	118	174	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lal8g0292	269	SMART	sant	4	59	IPR001005	-
	Lal8g0292	269	Gene3D	-	8	80	-	-
	Lal8g0292	269	SUPERFAMILY	Homeodomain-like	2	58	IPR009057	-
	Lal8g0292	269	PANTHER	TELOMERE REPEAT-BINDING FACTOR 4-RELATED	1	267	-	-
	Lal8g0292	269	SMART	h15plus2	111	177	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lal8g0292	269	ProSiteProfiles	Myb-like domain profile.	1	57	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0292	Lal-Chr8	1971578	1977731	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal8g0292	1	269	Single Myb Histone (SMH) Gene Family	AT1G17520	48.084	1.71e-70	217

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Lal8g0292		Linker_histone	7.8e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal8g0292	K09422		-	tcc:18596170	283.878