Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0289 ATGGGACATCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTATGGTCACCTGAAGAAGATGAAAAGCTCATCAACTACATCACAACTTATGGACATGGTTGCTGGAGTTCTGTTCCAAAACTTGCAGGTCTGCAAAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATTTACGACCTGATTTGAAACGTGGAAGCTTCTCTGCTCAAGAAGCATCCCTCATTATAGAACTCCATAGTATTCTAGGCAATAGGTGGGCTCAGATTGCCAAGCACTTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAGCTCTTTTCTCATGATGTTGTTCCTTCTTTATCCACATTTTCTGGCAATGCCTTTGTGGAAAGTTTCTTCCCTTTAAGTACTGATCAAAACCCTATCCTAAACTATCATCATCATAATCACCTAGACCACTTGTACCTTCCCATCCCATCCCCAATCCTGCATGGTAATTTTGATCATAATGATATCAAATTATTAGACATTAACAATTATAACACCAGTTTCCTACATATTCAGAATAATCCAATGCCACATACAGTACCATCCAATAGTAATCCACCTTTGTTGTGTGAAGATACATGGTCACTTGGCAGTGTACCTCTTCATCTTAATCCATATCAAGAAATTCAAATCACCAAAACTGATGCCACCACCCCACAGCATAATATTGTTGACAAATTCATCAATCAAAGTACATGGCAGCATTATGAATCGATGGAACCCAACATTGATGTACCAAAAGTATGTGAGAGCATTGAGGATTATGTTTGTAACATTCCATATAATTCATCTTCTGCCCCACATGAACAGCATGAGGCTCTTGCAAGAATTCAGTGTTTCGCACCTAGTATTTGTTCACAAGATCATGAAACTCTAGATGCAACCAACCAGGTGGAGTACATTGATGCTTTAATCATGTCATCATAA 990 0.3869 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSAQEASLIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLFSHDVVPSLSTFSGNAFVESFFPLSTDQNPILNYHHHNHLDHLYLPIPSPILHGNFDHNDIKLLDINNYNTSFLHIQNNPMPHTVPSNSNPPLLCEDTWSLGSVPLHLNPYQEIQITKTDATTPQHNIVDKFINQSTWQHYESMEPNIDVPKVCESIEDYVCNIPYNSSSAPHEQHEALARIQCFAPSICSQDHETLDATNQVEYIDALIMSS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0289 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal8g0289 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal8g0289 329 Gene3D - 11 67 - -
Lal8g0289 329 SMART sant 13 63 IPR001005 -
Lal8g0289 329 SMART sant 66 114 IPR001005 -
Lal8g0289 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lal8g0289 329 CDD SANT 17 61 IPR001005 -
Lal8g0289 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal8g0289 329 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Lal8g0289 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal8g0289 329 PANTHER TRANSCRIPTION FACTOR MYB26 2 328 - -
Lal8g0289 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal8g0289 329 CDD SANT 69 109 IPR001005 -
Lal8g0289 329 PANTHER MYB DOMAIN PROTEIN 55 2 328 - -
Lal8g0289 329 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0289 Lal-Chr8 1951066 1953094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0289 1 188 MYB Transcription Factor Family AT3G13890 64.251 4.53e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal8g0289 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0289 K09422 - gmx:102662609 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0335 25 2291185 2293160 Lal8g0289 8 1951066 1953094 LSH
Lal10g1090 10 17798060 17800103 Lal8g0289 8 1951066 1953094 LSH