Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0283 ATGATGGATAGTTTGATGTTCCAACAGCAACAGCAACAGTTAATAGTGGAGGAAAATATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTTCTTCAGGAACAAGAACTGAAATTGGTAATAGCAGCAATTACAGTCAACAACAACCATACTTGGCTCCACCACCAAGTTTTCAAGCTCAGCCTCAAGCAAAGAGAAAAAGAAACCTTCCTGGCAACCCAGACCCAGATTCTGAAGTTATAGCTTTGTCTCCAAAGACTCTTATGGCAACCAATAGGTTCATATGTGAGATCTGTAACAAGGGATTCCAAAGAGACCAAAATCTTCAACTTCACAGAAGAGGACACAATTTACCATGGAAATTGAAGCAAAGAACAAACAAAGATATAATAAGGAAGAAGGTGTATGTGTGTCCAGAACCAAGTTGTGTGCATCATGACCCATCAAGGGCTTTGGGAGACTTAACTGGAATAAAAAAACACTTCAGTAGAAAGCATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCAAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCATTCAAAGACATGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGTAA 630 0.3984 MMDSLMFQQQQQQLIVEENMSNLTSASGEASASSGTRTEIGNSSNYSQQQPYLAPPPSFQAQPQAKRKRNLPGNPDPDSEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKDIIRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0283 209 MobiDBLite consensus disorder prediction 24 55 - -
Lal8g0283 209 Gene3D Classic Zinc Finger 74 143 - -
Lal8g0283 209 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Lal8g0283 209 SMART c2h2final6 95 117 IPR013087 -
Lal8g0283 209 SMART c2h2final6 172 192 IPR013087 -
Lal8g0283 209 SMART c2h2final6 137 167 IPR013087 -
Lal8g0283 209 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 22 209 - -
Lal8g0283 209 Pfam Zinc-finger double-stranded RNA-binding 95 117 IPR022755 -
Lal8g0283 209 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 209 - -
Lal8g0283 209 Gene3D Classic Zinc Finger 150 209 - -
Lal8g0283 209 SUPERFAMILY beta-beta-alpha zinc fingers 94 192 IPR036236 -
Lal8g0283 209 MobiDBLite consensus disorder prediction 24 81 - -
Lal8g0283 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0283 Lal-Chr8 1904789 1908105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0283 1 209 IDZ Gene Family AT1G55110 75.355 5.75e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal8g0283 zf-C2H2_jaz 2.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0283 K25870 - rcu:8280380 350.903