Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0270 ATGGATGATCTGAGCTGGGATGCTTCACAATGCATTTCTAACATACCAATCTTGTGGAACACTCATGAGCAAAGGCAAGAGCTCGAAAGAGGAGGCTACTCCATGCCCAATTTAAGTTCAAGTGTTTTGAATCAAATGCAAGAGATGCACAAGACTCAAACAACAGATAGTACCATGAGAATGATGCTACCAAACACAAATGTGTCAGCAACAATCATACCTGTTAAATCTGCAGCTGGAACCAGTTGGGAATTAGAAGCTTACACATCTCAATCATGCCACCACTCCCTTTCTGTCAATGTGATGAACAATTATGTGCAAGATTTCAGCATGACCCACCAACAACAACAACAACAACTTGATCAGTGCAAGCTTTCCACTACAAATAGTATCATCAGCACAGAGAATAAGTCTGTTGAAGATAATGGGATTTCCATAATTTTATCTGACTGCAGAAACTTATGGAACAACAACAACAACTTCAGTTATGGTAACAATGCCACTGCAGTTTCCTCTGGTGAATCTGAGAGTAATGCTTCAAGTTCTAGAGACAAAAACATGCAACTGGATGAAACAGTCTCTCAAAGATCCTCAGATCAATATGTAAGTCAAGAAAAAATCATAGATTCTTATAAGGTTAATAGGTGCACAAAATTGAGTAATGATATTCAGTATGATCCCCACTTCAGTATTGTTCAGAATTCTCCTGCTAATAGCACTGAAGTTGGTACTTTCAAGCTTATCTCAGAGAACCAACAAAAATCCAAGAAACCAAGGTGGGATCATAAGCATCCTTGTTCATCTACTATAAGTTTCCAGCAACCAAATTCATCATCAGTGTCATCATTCAATGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCATTTAGGCCAGTGAACTTAGGCTTGGAGGTTGTGGAAAAGCCTAAGAGGAAAAATGTGAGGATATCATGTGATCCACAAACTGTGGCTGCAAGGCAGAGAAGGGAGAGAATAAGTGAGAGGATTAGGACTTTGCAAAAGATTGTGCCTGGTGGAACCAAGATGGATACTGCATCAATGCTTGATGAGGCTGCTAACTACCTCAAGTTTCTTAGGTCACAAGTCAAAGCACTAGAAAGTCTAGGGAACAAGGTTGATGCAATGCATAATTCTCCTCCTACTAGTATTGCTTTCTCTTTCAACCCTTCTTTTCCCATGCAAAACCCTACCCATAATATCCAACATTCCCTAAGATGA 1266 0.3981 MDDLSWDASQCISNIPILWNTHEQRQELERGGYSMPNLSSSVLNQMQEMHKTQTTDSTMRMMLPNTNVSATIIPVKSAAGTSWELEAYTSQSCHHSLSVNVMNNYVQDFSMTHQQQQQQLDQCKLSTTNSIISTENKSVEDNGISIILSDCRNLWNNNNNFSYGNNATAVSSGESESNASSSRDKNMQLDETVSQRSSDQYVSQEKIIDSYKVNRCTKLSNDIQYDPHFSIVQNSPANSTEVGTFKLISENQQKSKKPRWDHKHPCSSTISFQQPNSSSVSSFNEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISCDPQTVAARQRRERISERIRTLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMHNSPPTSIAFSFNPSFPMQNPTHNIQHSLR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0270 421 PANTHER TRANSCRIPTION FACTOR BHLH87 9 413 - -
Lal8g0270 421 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 413 IPR045843 GO:0003700|GO:0006355
Lal8g0270 421 Pfam Helix-loop-helix DNA-binding domain 335 374 IPR011598 GO:0046983
Lal8g0270 421 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Lal8g0270 421 Gene3D - 330 394 IPR036638 GO:0046983
Lal8g0270 421 MobiDBLite consensus disorder prediction 266 285 - -
Lal8g0270 421 MobiDBLite consensus disorder prediction 251 285 - -
Lal8g0270 421 MobiDBLite consensus disorder prediction 169 201 - -
Lal8g0270 421 Coils Coil 364 384 - -
Lal8g0270 421 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 389 IPR036638 GO:0046983
Lal8g0270 421 SMART finulus 331 380 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0270 Lal-Chr8 1816945 1818210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0270 86 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.292 6.62e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal8g0270 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0270 - - lang:109358246 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0270 8 1816945 1818210 Lal8g0270 8 1816945 1818210 ECH
Lal25g0311 25 2140449 2141837 Lal8g0270 8 1816945 1818210 LSH
Lal10g1111 10 17935014 17936988 Lal8g0270 8 1816945 1818210 LSH
Lal8g0270 8 1816945 1818210 Lal20g1122 20 15509394 15510524 PCT
Lal20g1122 20 15509394 15510524 Lal8g0270 8 1816945 1818210 PCT