Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0266 ATGATGGATGAGAGGTTAAGAAATGAGGACTCTCCTCAGCTTTTGGATTTGATCTCAAACGAGAGGGAGTGGAACATGATGAAGGGTGAAGGAAAATGCCCTGAGGATAGGAAACTTGAACTCAAGCTTGGTCCACCCGGTGGTGAAGATTGGTGTGAGGATAAAATGAAAAACATCAACAAAACTGGTACTGAAAGAAATGAGTCTCTACTCTCTCTTGGTTACTTCTCTAACAATGGTTTTCAAGATCAGAATCTTTCTACTTCTGACACTCCAGCTAAGGCTATTTTACCCTTTCCATGGTCTTCCTCAACAAGTTATCATCACCATCAGGGTAATAATAAAGCTTCATCATTTCTTGTGATGGGAAATGATGCATCCCCTAAGGTGGTAGAGTTGCAGAATGGTGCTGCTGAGAAGAAAGTATTATCTTCTGTTAATAGAGCTGTTCCCAACACCTCTCAGAAAAGGAATGCTCCTGGTCCAGTGGTAGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACCTTGCAACCAGCAACACTTCTAAGTCACAACCTGAGTCCTCTATGCTGCAGAAGCAGCATGACAAGGTTGTTGGTAAGAAACATGTTGACAACTATGGTGGTGGTGGCAAAGGTTTGTTTGTAAAGATCAACATGGATGGTGTTCCAATTGGGAGAAAAGTTGACCTTAATGCTTACTATAGCTATGAAAATCTATCCTCTGCTGTGGATGAGCTTTTTAGAGGCCTGCTTGCAGCTAAAAAAGATTCCTGTGCTGGTGGAGTTCAGAACAAGAAAGAGGAAGAGAAATGCATTATAGGTTTATTGGATGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCATATGTTCCTATCAACAGTGAAAAGGCTGAGGGTGTTGAAGAGTACTGACCTTTCTGCTTTTACCATTGGCAGTAAACAAGAGAAGATACCACTTGACTCAGCAATGAAATAA 1020 0.4186 MMDERLRNEDSPQLLDLISNEREWNMMKGEGKCPEDRKLELKLGPPGGEDWCEDKMKNINKTGTERNESLLSLGYFSNNGFQDQNLSTSDTPAKAILPFPWSSSTSYHHHQGNNKASSFLVMGNDASPKVVELQNGAAEKKVLSSVNRAVPNTSQKRNAPGPVVGWPPIRSFRKNLATSNTSKSQPESSMLQKQHDKVVGKKHVDNYGGGGKGLFVKINMDGVPIGRKVDLNAYYSYENLSSAVDELFRGLLAAKKDSCAGGVQNKKEEEKCIIGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFLSTVKRLRVLKSTDLSAFTIGSKQEKIPLDSAMK 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0266 339 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 330 IPR003311 GO:0005634|GO:0006355
Lal8g0266 339 SUPERFAMILY CAD & PB1 domains 212 314 - -
Lal8g0266 339 MobiDBLite consensus disorder prediction 173 192 - -
Lal8g0266 339 MobiDBLite consensus disorder prediction 148 201 - -
Lal8g0266 339 Gene3D - 209 329 - -
Lal8g0266 339 Pfam AUX/IAA family 39 321 IPR033389 -
Lal8g0266 339 ProSiteProfiles PB1 domain profile. 213 317 IPR000270 GO:0005515
Lal8g0266 339 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 4 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0266 Lal-Chr8 1793415 1797689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0266 216 328 B3 DNA Binding Superfamily AT4G23980 32.743 1.39e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal8g0266 AUX_IAA 9.9e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0266 K14484 - gmx:100804593 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0266 8 1793415 1797689 Lal8g0266 8 1793415 1797689 ECH
Lal25g0308 25 2113729 2118841 Lal8g0266 8 1793415 1797689 LSH
Lal10g1114 10 17960559 17964591 Lal8g0266 8 1793415 1797689 LSH