Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0253 ATGTCTACACCATTTGAACATGATTACATAGGCTTAGCAGAGAATCCACCAATGTATGGAAACTCTAACAATATATCTTCTCTCAACTTCAAGGAAACAGAACTGAGGCTTGGCCTCCCAGGTTGCATATCTCCTGAGAAAAAATCAGGAACTGTTGTTGGGTTGTCACTTTTTGGCATTGACTTGCAGAACAAGCAAAAAAATAATGTTTGTTTTGTTGCAACTCCTTTGAAGAACCTTGTTGTTGGGGCAAAGAGGGACTTCTCTGATGCTATTGATGGATATGAGGTTGATATGGGAAAAGGAGCTGTTTTGTTTTCTCCTAGAGGTGGGAATGTTGGTAAATCTCTTTTTGGTTTAGAGGCTAATAATATAACCCCTAATCAAACAATCAAAGAGGTTGGTAATGTTATAGTTCCTCAATCTGCAATGGAAAAGAATAATCAGGTTTCTGGAACAAATGACCATGCTATTGCTCCTGCTGCAAAGGCACAGGTTGTAGGGTGGCCACCAATTCGATCTTTTCGAAAGAGCACGATGGCTTCCAATTTGACACAGAATAATGATGAAGGTGAAGGAAAGGCAGGATTTGGTTGTCACTATGTGAAGGTTAGCATGGATGGAGCCCCTTATCTCAGAAAGGTTGATCTCAAAACCTACAGCAACTATATGGAACTTTCTCCAGCTCTTCAAAATATGTTCAGCTGCTTTACCATTGGCCAATGCAATTCACATGGACTTCCTGGCAAAGATGGATTAAGTGAGAGCTCTTTGGGGGATCTTCTCCATAGTTCTCAATATGTTTTTACATATGAAGATAAGGATGGGGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATGTTTATTGACTCATGTAGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTTGCTCCAAGGGCCATGGAAAAATCTAGGAGCCAAAACTAG 960 0.4094 MSTPFEHDYIGLAENPPMYGNSNNISSLNFKETELRLGLPGCISPEKKSGTVVGLSLFGIDLQNKQKNNVCFVATPLKNLVVGAKRDFSDAIDGYEVDMGKGAVLFSPRGGNVGKSLFGLEANNITPNQTIKEVGNVIVPQSAMEKNNQVSGTNDHAIAPAAKAQVVGWPPIRSFRKSTMASNLTQNNDEGEGKAGFGCHYVKVSMDGAPYLRKVDLKTYSNYMELSPALQNMFSCFTIGQCNSHGLPGKDGLSESSLGDLLHSSQYVFTYEDKDGDWMLVGDVPWEMFIDSCRRLRIMKGSEAIGLAPRAMEKSRSQN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0253 319 ProSiteProfiles PB1 domain profile. 199 301 IPR000270 GO:0005515
Lal8g0253 319 Gene3D - 194 313 - -
Lal8g0253 319 PANTHER AUXIN-RESPONSIVE PROTEIN 20 311 - -
Lal8g0253 319 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 311 IPR003311 GO:0005634|GO:0006355
Lal8g0253 319 SUPERFAMILY CAD & PB1 domains 200 300 - -
Lal8g0253 319 Pfam AUX/IAA family 32 310 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0253 Lal-Chr8 1708171 1710186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0253 202 309 B3 DNA Binding Superfamily AT4G23980 28.704 2.12e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal8g0253 AUX_IAA 2.4e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0253 K14484 - gmx:100804423 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0253 8 1708171 1710186 Lal8g0253 8 1708171 1710186 ECH