LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0234	ATGGAAATCCACAAGGTTGAGTTGCCACCACATAGAAGCACATTACAGAAACTAAAACAAAGACTCTCTGAAATCTTCTTATCAGATGATCCTTTCTACCCATTTAAGAATCAAACATTCCGAACAAAGTTCATTTTAGGACTTCAATACATTTTCCCTATATTCCTGTGGGCCCCTCAGTATAACTTTCGTCTTCTTCGCTCTGATATCATCTCTGGCCTCACCATTGCTAGTCTTGCCATTCCTCAGGGAATCAATTCAAGTTTTGTGCCCCCATTGATATATTCCATGCTTGGGAGTTCTAAACATCTTGGTGTTGGTCCAATTTCAATTGCATCTATGGTTATGGGGTCAATGTTAAGTGAAATAGTTTCTTTCACTCAATACCCAACTCTTTATCTCAAATTGGCTTTCACTACCACTTTCTTTGCTGGAATATTCCAAGCCTCTCTGGGTATATTAAGGTTAGGCTTTATAATTGATTTTCTATCAAAGGCAACACTGATAGGTTTCATGGCTGGTGTTGCGGTCATTGTTTCACTACAACAGCTGAAAGCATTACTTGGAATAGTGCACTTTACCAACAAGATGCAAATAGTTCCTGTTCTCATCTCTGTTTTCAAGCAAAGACATGAGTGGTCATGGCAAGCCGTTGTACTGGGATCCTGCCTCTTGGTTTTTCTGCTGACAACAAGATACATTAGCTTAAAGAAACCAAAACTGTTCTGGGTTTCAGCAGCTGCCCCATTAACATCAGTTATTCTGTCAACCATTTTAGTCTTCCTTCTCAGAAACAAGACTAATAAAATAGCATTTATTGGGGAGTTACCGAAGGGCATTAATCCACCATCACCAAACTTGTTATACTTCAAAGGTCCTCTCTTGGCTCTTGCTATCAAAACCGGCCTTATCACAGGGATCTTATCTCTCATTGAAGGAATTGCAGTAGGAAGAACATTTGCAGCATTTAACAACTACCAGGTTGATGGAAACAAAGAAATGATAGCTATTGGCGTTATGAACGTAGTTGGTTCTTGTTCTTCATGCTTTGTCACAGCAGGATCCTTTTCTAGATCAGCTGTTAACTATAATGCTGGAGCAAAGTCAACAGTTTCAAATATAGTCATGGCTGCAGCTGTTCTAGTGACTCTTCTGTTTCTCATGCCTCTATTCCATTATACGCCAAATGTTGTCTTAGGAGCCATTATCATCACTGCTGTGATTGGGTTAATAGATTATCAAGCTGTGGTTAAACTGTGGAAGGTTGACAAACTTGATTGCCTGGCATGTATGTGTTCCTTTTTTGGGGTTTTGTTCATTTCAGTACCTGTAGGCCTTAGTATCGCGGTTGGAATATCAGTCTTCAAGATATTGCTTCATGTGTCTAGACCAAACACTTTGGTTTTGGGAAATATATCAGGAACAAACATATTCCATAATGTTAAACAATACAAAGAAGCTTTAAAAATCCCTTCATTTCTCATTTTAGGAATTGAATCTCCAATCTTTTTTGCTAATTCAAATTACCTTCAAGAAAGGATACTGAGATGGGTTAGAGAAGAGGAAGAACTTATAATAGCAAACAATGGAAGTTCATTAAGATGCATAATTTTAGACATGACAGCTGTCACAGCCATAGACACAAGTGGACTTGACACTTTATGTGAACTTAAAAAGATGCTGGAGAAAAGATTACTCCAGCTTGTGTTGGCAAATCCTGTTGGAAATGTGACAGAAAAGTTACACCAGTCAAAAATTTTGGAGAACTTTGGATTGAAGGGAGTCTATCTCACAGTGGGAGAAGCTGTGACTGACATTTCTTCATCTTGGAAACCTCAGCCCTGA	1845	0.387	MEIHKVELPPHRSTLQKLKQRLSEIFLSDDPFYPFKNQTFRTKFILGLQYIFPIFLWAPQYNFRLLRSDIISGLTIASLAIPQGINSSFVPPLIYSMLGSSKHLGVGPISIASMVMGSMLSEIVSFTQYPTLYLKLAFTTTFFAGIFQASLGILRLGFIIDFLSKATLIGFMAGVAVIVSLQQLKALLGIVHFTNKMQIVPVLISVFKQRHEWSWQAVVLGSCLLVFLLTTRYISLKKPKLFWVSAAAPLTSVILSTILVFLLRNKTNKIAFIGELPKGINPPSPNLLYFKGPLLALAIKTGLITGILSLIEGIAVGRTFAAFNNYQVDGNKEMIAIGVMNVVGSCSSCFVTAGSFSRSAVNYNAGAKSTVSNIVMAAAVLVTLLFLMPLFHYTPNVVLGAIIITAVIGLIDYQAVVKLWKVDKLDCLACMCSFFGVLFISVPVGLSIAVGISVFKILLHVSRPNTLVLGNISGTNIFHNVKQYKEALKIPSFLILGIESPIFFANSNYLQERILRWVREEEELIIANNGSSLRCIILDMTAVTAIDTSGLDTLCELKKMLEKRLLQLVLANPVGNVTEKLHQSKILENFGLKGVYLTVGEAVTDISSSWKPQP	614

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal8g0234	614	CDD	STAS_SulP_like_sulfate_transporter	484	599	-	-
Lal8g0234	614	Pfam	STAS domain	484	602	IPR002645	-
Lal8g0234	614	Pfam	Sulfate permease family	66	432	IPR011547	GO:0016021
Lal8g0234	614	Gene3D	STAS domain	463	608	IPR036513	-
Lal8g0234	614	SUPERFAMILY	SpoIIaa-like	488	604	IPR036513	-
Lal8g0234	614	PANTHER	SLC26A/SULP TRANSPORTER-RELATED	1	614	-	-
Lal8g0234	614	PANTHER	SULFATE TRANSPORTER	1	614	IPR001902	GO:0015301\|GO:0016020\|GO:0055085
Lal8g0234	614	ProSiteProfiles	STAS domain profile.	483	606	IPR002645	-
Lal8g0234	614	TIGRFAM	sulP: sulfate permease	53	602	IPR001902	GO:0015301\|GO:0016020\|GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0234	Lal-Chr8	1585033	1590934	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal8g0234	1	614	Inorganic Solute Cotransporters	AT3G15990	70.317	0.0	910

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal8g0234	K17471		-	gmx:100812617	986.482

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lal8g0234	8	1585033	1590934	Lal8g0234	8	1585033	1590934	ECH
Lal10g1142	10	18132022	18137035	Lal8g0234	8	1585033	1590934	LSH
Lal8g0234	8	1585033	1590934	Lal1g1274	1	14124886	14132018	PCT
Lal8g0234	8	1585033	1590934	Lal18g0190	18	1560631	1565544	PCT
Lal1g1274	1	14124886	14132018	Lal8g0234	8	1585033	1590934	PCT
Lal18g0190	18	1560631	1565544	Lal8g0234	8	1585033	1590934	PCT

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