Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0227 ATGTCACCGGAAAGTAGCACCTACTCATCGGAATCTGACGCTGTTGAATTTAACTTGAAGGAGACTGAGCTCACTCTGGCCCTTCCCGGCACCAAACGTGGCTTCTTGGACACCGTTGATCTTCATCTTGCCACCCCAACCCATAATTGTGCAAATTCTGTCAATAACTTCTTGTGCTCCGTCACAAAATCCCAAACACCCAATGAAGAAGTGGTGGGGTGGCCACCGGTGAGGGGGAGGAGGAAGAATGCGATGAAGAGTTGCAAATACGTGAAGGTGGCGATGGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAATTGTATGAGAGTTATGATCAGCTTCTTAGAGCATTAGAGACCATGTTTTGTTGCTTAACCATTCGTAATTATTGTTTGAATGAGAAGAAAGTGATGGACAGAGGAAAAGGGATAGAATACATGCCCACTTATGAAGATAGAGATGGTGATTTGATGTTGGTTGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGAATAAGATTGATGATAAGTTCAGAAGCAATTGGCTTAGGCGAGTCCGACGAGTGGTTCAAAATGTAA 591 0.4399 MSPESSTYSSESDAVEFNLKETELTLALPGTKRGFLDTVDLHLATPTHNCANSVNNFLCSVTKSQTPNEEVVGWPPVRGRRKNAMKSCKYVKVAMDGAPYLRKVDLELYESYDQLLRALETMFCCLTIRNYCLNEKKVMDRGKGIEYMPTYEDRDGDLMLVGDVPWKMFVESCKRIRLMISSEAIGLGESDEWFKM 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0227 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 185 IPR003311 GO:0005634|GO:0006355
Lal8g0227 196 Pfam AUX/IAA family 86 188 IPR033389 -
Lal8g0227 196 PANTHER AUXIN-RESPONSIVE PROTEIN 10 185 - -
Lal8g0227 196 Gene3D - 82 192 - -
Lal8g0227 196 SUPERFAMILY CAD & PB1 domains 79 180 - -
Lal8g0227 196 ProSiteProfiles PB1 domain profile. 88 183 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0227 Lal-Chr8 1524757 1527703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0227 55 183 B3 DNA Binding Superfamily AT2G46530 32.558 1.68e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lal8g0227 AUX_IAA 1.1e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0227 K14484 - gmx:100815098 239.58