Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0226 ATGGAATTAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTAGGTCTTCCCGGTGGGGAAACCATGTGTGTAGATAAGAATGAGAAGAAGAGGGTGTTCTCGGAGATTGAGGGTGGCGGTAACCGGAAAATGTTTACTAAGAATGAAGTGGTGGGGTGGCCTCCGGTGTGCTCATACCGGAAGAAGAATAACATGAATGAAGCTTCAAAACCTTATGTGAAGGTTAGCATGGATGGTGCTCCATTCTTGCGTAAAATTGATTTAGGTATGCATAAGGGATACTCAGAGTTAGTCTTGGCCTTGGAGAAACTCTTTGGTTCTTATGGAATTGAGGCGTTGAAGGATGGGGAGAATTGTGAAGAGGTTCCCATTTATGAAGACAAAGATGGTGATTGGATGCTGCTTGGAGATGTTCCTTGGGAGTAA 426 0.4413 MELGLGLEITELRLGLPGGETMCVDKNEKKRVFSEIEGGGNRKMFTKNEVVGWPPVCSYRKKNNMNEASKPYVKVSMDGAPFLRKIDLGMHKGYSELVLALEKLFGSYGIEALKDGENCEEVPIYEDKDGDWMLLGDVPWE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0226 141 Pfam AUX/IAA family 42 141 IPR033389 -
Lal8g0226 141 Gene3D - 64 141 - -
Lal8g0226 141 ProSiteProfiles PB1 domain profile. 70 141 IPR000270 GO:0005515
Lal8g0226 141 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 141 IPR003311 GO:0005634|GO:0006355
Lal8g0226 141 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 1 141 - -
Lal8g0226 141 SUPERFAMILY CAD & PB1 domains 63 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0226 Lal-Chr8 1518838 1520359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0226 62 140 B3 DNA Binding Superfamily AT4G23980 36.709 1.66e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal8g0226 AUX_IAA 5.2e-26 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0226 K14484 - gmx:100791342 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0226 8 1518838 1520359 Lal8g0226 8 1518838 1520359 ECH
Lal25g0272 25 1868738 1874259 Lal8g0226 8 1518838 1520359 LSH
Lal10g1148 10 18177786 18180294 Lal8g0226 8 1518838 1520359 LSH