Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0195 ATGAGTAGTAGTTGGAGTTATGGCAGTGCGATTGAAGCACCTTGTTCCGAAGAGGAACTCAGTGAATCGTTCTCAACATCATCCCTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACCCGTGGTCTCATGCATCTTTTTCGCTACGATTCCAACTCTTCCTTATCATCTTCAAATCCTTCTCCTCCTCCTCCTCCTCTTCCAGTTGGACGAAAACCACTTGTTTGTGTTCTTGGAGTTCCAAATCACATGACTTATGCTGATTTCTGCCAGTTCTCTGGTTCTTTTATTCACCATATCCTTGAGATGCGTATTGTTAGAATGGATGGGGTGGAGGATCAGTACAGTGTTTTAATAAGGTTCGATGACCAAGACTCGACAGACAGCTTCTATAAGCATTACAATGCCCGCCACTTCTCATCTCTGGAGGTGGAGGTTTGCCGAGTTCTCTTCACAATAGATGTACAGTACACTGGATCAATTGAACATGCACAGCCATCTAACAGTAGTTCAAATGAACAGCCTACATGTCCTGTCTGCCTTGAGCGATTAGACCAAGACACAAGTGGAATTCTTACAACTATATGCAATCATTCTTTCCACTGTTCTTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAACAAGCAGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAAAACCTTTGGATATGTGTTATATGTGGTTTTGTTGGGTGTGGAAGATATAAAGAAGGGCACGCCATAATACATTGGAAAGAGACACAGCATTGCTACTCCCTTGAAGTGGAAACCAAACGCGTGTGGGATTATGTGGGAGACAACTATGTTCATAGACTTATTCAATCCAAAACTGATGGGAAATTGGTTGAGCTGAATTCTCACTGTGTGCATGCAGACAATGGGTGTGGAAGCTGCAGCTGTGAAGATAATTCCATGAGCGAGGCTATACTTAACAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTAGTCAACTTGAAAGCCAAAAATTATACTTTGAATCCTTATTACAAGAAGTAAAAGAAGAAACCGAACAGGAAATTTCCATAGCTGTTCAGAAGGCTCTCAGTCTCAAAAAGCCTAAGATTCAGGCCAAGATCGATAGAGTTAATAAAGAGAAGAAATTTCTAGATGATCTTAATGAGAACCTTGTGAAAAATGAGGAGATTTGGAAAGCAAAGTTACTTGAGATTGAAGAGAGGGAAAGAAAAGCTTTAAAACTGACGGATGGTAGAGTAGTGGGCTTGGAAGAGCAGCTTAGAGATCTGATGGCTTGTCTTGAGGGTGCTAAGAATGTAGAAAAGCTGCAGGGGACAAATGAAATTAAAGATGGGATTGTCTTTGACACACCAAGATAA 1419 0.4087 MSSSWSYGSAIEAPCSEEELSESFSTSSLNFSSGNPRIEETRGLMHLFRYDSNSSLSSSNPSPPPPPLPVGRKPLVCVLGVPNHMTYADFCQFSGSFIHHILEMRIVRMDGVEDQYSVLIRFDDQDSTDSFYKHYNARHFSSLEVEVCRVLFTIDVQYTGSIEHAQPSNSSSNEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKEGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADNGCGSCSCEDNSMSEAILNSKVEAIVNEYNELLASQLESQKLYFESLLQEVKEETEQEISIAVQKALSLKKPKIQAKIDRVNKEKKFLDDLNENLVKNEEIWKAKLLEIEERERKALKLTDGRVVGLEEQLRDLMACLEGAKNVEKLQGTNEIKDGIVFDTPR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0195 472 Coils Coil 387 407 - -
Lal8g0195 472 Pfam BRCA1-associated protein 2 69 165 IPR011422 -
Lal8g0195 472 SUPERFAMILY RING/U-box 194 293 - -
Lal8g0195 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 220 IPR013083 -
Lal8g0195 472 SMART Zf_UBP_1 228 277 IPR001607 GO:0008270
Lal8g0195 472 Pfam Ring finger domain 177 218 IPR001841 -
Lal8g0195 472 ProSiteProfiles Zinc finger UBP-type profile. 212 305 IPR001607 GO:0008270
Lal8g0195 472 SMART ring_2 178 217 IPR001841 -
Lal8g0195 472 ProSiteProfiles Zinc finger RING-type profile. 178 218 IPR001841 -
Lal8g0195 472 CDD RING-H2_BRAP2 176 219 - -
Lal8g0195 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 297 IPR013083 -
Lal8g0195 472 Pfam Zn-finger in ubiquitin-hydrolases and other protein 229 288 IPR001607 GO:0008270
Lal8g0195 472 CDD RRM_BRAP2_like 76 157 - -
Lal8g0195 472 PANTHER BRCA1-ASSOCIATED PROTEIN 18 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0195 Lal-Chr8 1298388 1308631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0195 174 218 C3H Transcription Factor Family AT1G72220 48.936 2.65e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0195 K10632 - gmx:100794688 756.903