Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0192 ATGGAGGTGCCATGGCAAAACTTTCTCTCCGATATGGAAATGGAAGAGGGTGATTTCTTCAATGAAAGCAATAAGAACTTACTTGATGATCATGAATTGGTTCTTGGAAAGTTCCTTCAACAACCAGCTTTTTCATCTGACAGTGAAAGTCTCTATCCTCCAAATAATGGTGGAAGTTGTTTGTCTTTTGAGGACACTAATACAACCAACAACTTTGGCAAACATTTAACGAAAAGCAATAGCTCCAACTCCATAGGATCTCAACATGTTCCACACACTGCCACTGCTACTACTTCTCCAACATCATATGTTTTGTGTTTTGATGAATCCAGTGTTGTATCACTAGCCGGAGATACTGGGGAATTAGTTAATGGGAGAAAGTGCAAAGGTAATAATAGTTGTGACCAATCAAAAGGGGTTAACATATCAGGTTCAAGGAAGAGTAGAAACTCTTTGGAGAGTGTGAACCACATCATGGCTGAGAGAAAAAGGAGACAAGAATTGACTGAGAGGTTTATAGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGATTGACAAGGCCTCAATACTTAGTGAAGCAATCACTTATGTGAAACAACTTAAAAAAAGAGTTGAAGACCTTGAGGAACAAAGATGCTGCAAGAAAATAAGAGTAGAATCAGTGTCATTCATCAACAAAACCAACTTCTACAATGATGAAGGTTCTGTTTCTGGTGATAAAAAAACAAACTTTGATGATACCCATGAACTCAATGTATCACTCCCTGAAGTTGAAGCAAGAGTTTTGGAAAAAGAAGTACTAATCCGCATTCATTGCAAGAATCAAAATGGCACTATTATCAAAATATTGACCCATCTTAAAAGCCTACATCTCTCCACAATAAGCAATAGTGTGTTGCCATTTGGGAATTCTTTTCTTGACATTACCATTATTGCTCAGGAAATGGGTGATGACATGAATGAATGCTTGGGCAAGAACAATTCTTTTGTTGAAGAGTTCCTTAGAGAGATTTTAGAACCAGAAGAAACCATTACTACCCCTCTCTCCACAGCCTCCTCCCCAATCATTGGCCAGAACATGATGATCAAGAATGACTCATCCATCACTACTCAACAATATGGTGCACAAAACCCAACCTCAACTCCAACAACCTATATATTGTCTTTTGATAAAGCCACTGCATTATTACCAAGTGGACATGATCCTAATGGCTCTGGTTGGAAAGAGGTTTCTCTTCCCAAATTGGGAAACCATGCTGCTACAGATTCTTTGCCTTTGTCCTTATCAAGGGCTAGCCATGGAACAAAGAAGACTAGAAGTACTTCTGAGACAATGGGTCACATATTGTCAGAAAGAAATAGGAGACAAGAACTCACAAAGAAGTTCATAGCACTTTCAGCCACTATACCTGCCTTGAAGAAGGCCAGTCTCTCTCTCTCTCTCCCCATATATCTATCTATCTTCATGCATGTTATTGTATAA 1485 0.3886 MEVPWQNFLSDMEMEEGDFFNESNKNLLDDHELVLGKFLQQPAFSSDSESLYPPNNGGSCLSFEDTNTTNNFGKHLTKSNSSNSIGSQHVPHTATATTSPTSYVLCFDESSVVSLAGDTGELVNGRKCKGNNSCDQSKGVNISGSRKSRNSLESVNHIMAERKRRQELTERFIALSATIPGLKKIDKASILSEAITYVKQLKKRVEDLEEQRCCKKIRVESVSFINKTNFYNDEGSVSGDKKTNFDDTHELNVSLPEVEARVLEKEVLIRIHCKNQNGTIIKILTHLKSLHLSTISNSVLPFGNSFLDITIIAQEMGDDMNECLGKNNSFVEEFLREILEPEETITTPLSTASSPIIGQNMMIKNDSSITTQQYGAQNPTSTPTTYILSFDKATALLPSGHDPNGSGWKEVSLPKLGNHAATDSLPLSLSRASHGTKKTRSTSETMGHILSERNRRQELTKKFIALSATIPALKKASLSLSLPIYLSIFMHVIV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0192 494 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 364 476 - -
Lal8g0192 494 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 340 - -
Lal8g0192 494 Gene3D - 145 216 IPR036638 GO:0046983
Lal8g0192 494 PANTHER BHLH TRANSCRIPTION FACTOR 5 340 - -
Lal8g0192 494 PANTHER BHLH TRANSCRIPTION FACTOR 364 476 - -
Lal8g0192 494 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Lal8g0192 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 215 IPR036638 GO:0046983
Lal8g0192 494 MobiDBLite consensus disorder prediction 72 94 - -
Lal8g0192 494 Coils Coil 191 211 - -
Lal8g0192 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Lal8g0192 494 SMART finulus 158 207 IPR011598 GO:0046983
Lal8g0192 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 434 477 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0192 Lal-Chr8 1283274 1296153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0192 435 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.889 1.05e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal8g0192 HLH 3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0192 - - lang:109357653 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1232 1 13633492 13639665 Lal8g0192 8 1283274 1296153 PCT
Lal18g0225 18 1866322 1869335 Lal8g0192 8 1283274 1296153 PCT