Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0188 ATGGGTACATTTATTAAATTGATAGAGTATAAGGCTGCAAAAGATGATTATATAAATGTGTCACTCTCGTTCTTCACTTCACTTTCTCATTCTCAAACACACTTCACAAACAAGTTTGAAACAATTAAGCTCTTCATCATCATGGCTAGACCCCAACAACGGTATCGTGGTGTACGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTCTTTTGAAGACTAGAATATGGCTAGGAACATTTGAAACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAAGCTCATGTGTGGTCCAAAAGCACGCACCAATTTTCCATACAACCCTAATGAGCCACATTCTTCTTCATCCAAGCTCTTATCTGCAACTTTGACCGCAAAGTTACACAAGTGTCACATGGCTTCTCTTTCCCTTCAAAAAACAAAGCAGAAACCACAGCAGAAAGAGCCTCAAAGGGCTCAAAATAGATCCAACACTTTTGCTTCTGACAATGTTATAGACACCGGTTTTAAATGGCCAGAGATGTTGATGAGACATGAAGACCTGCAATGGCTGCAAGGGAATTGGGTTGGTGAGGAAAGCCAAGTTGAAGTTAAAGAACAAGAATTTCAACAAGTTCTTCATGATGATCACATAGATCAGATGATACAAGAGTTGCTTGATTATGGGTCAATTGAGCTTTGCTCTAATGGCTCAGATTAA 717 0.4059 MGTFIKLIEYKAAKDDYINVSLSFFTSLSHSQTHFTNKFETIKLFIIMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAAKLMCGPKARTNFPYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQKTKQKPQQKEPQRAQNRSNTFASDNVIDTGFKWPEMLMRHEDLQWLQGNWVGEESQVEVKEQEFQQVLHDDHIDQMIQELLDYGSIELCSNGSD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0188 238 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Lal8g0188 238 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Lal8g0188 238 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Lal8g0188 238 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Lal8g0188 238 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Lal8g0188 238 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Lal8g0188 238 PANTHER ETHYLENE RESPONSE FACTOR 48 234 - -
Lal8g0188 238 Pfam AP2 domain 54 103 IPR001471 GO:0003700|GO:0006355
Lal8g0188 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 48 234 - -
Lal8g0188 238 MobiDBLite consensus disorder prediction 142 165 - -
Lal8g0188 238 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0188 Lal-Chr8 1255007 1256504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0188 48 234 AP2-EREBP Transcription Factor Family AT5G25190 62.032 3.89e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal8g0188 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0188 - - gmx:100527365 283.493