Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0180 ATGGCGGAAAACGAGAACGGTGCCAAAGCAATCGAAGATGAACCTGTTATCGGGCCGGGTCCAGCCCCACGTACCCGACTCAAACGACCGCTCCAGTTCGAACAAGCTTACCTCGATACCTTACCCTCTGCTAACATGTATGAGAAAAGTTATATGCATCGTGATGTCGTTACGCATGTTGCTGTTTCAGCTGCTGATTTTTTCATCACTGGAAGCATTGATGGGCATTTGAAGTTCTGGAAGAAAAGGCCTATTGGTATTGAGTTTGCCAAACACTTCAAAGCTCATCTTGGTCCAATTGAAGGTCTATCTGTTAGTGGTGATGGTCTGCTTTGCTCTACAATATCAGATGACCGTTCTGTAAAAGTATATGATGTAGTCAACTTTGATATGATGGTGATGATTCGCTTGCCATATATCGCTGGTGCTGTTGAGTGGGTATACAAACAAGGGGATGTCAAAGCTATGCTTGCCGTTAGTGATCGGAACTCATCTTTTGTGCACATATATGATGTACGAGCTGGTTCGAATGATCCTATCATCTCCAAAGAGATACATTTGGGTCCTATTAAAGTTATGAAGTACAATCCCATATATGATTCTGTTATTTCAGCAGATGTAAAGGGTATAATTGAATACTGGAGCCCTGCTACTCTTCAATTTCCGGAGGATGAGTGTGGATCTGATCATTTTGAACACATGTTTATACATAAGATTCTCATTATATTATCATGGATCCACGGGGATTGCCCTGTTCAGGGCCTGTGGGCGGAGACTTTTTCCTGCAGGGATGGGGGAGAAATTCTCCCACGAAGGCGATTTGTGGACGGGGTGGGGATTCCCAAACAGTGTACAGATTGTCATCCTGTATATCACTTATCGCCTCATCGGGTCAGCTTTAAACTGAAAACTGATACTAATCTCTTTGAAATAGTAAAATGCAAGACTTCTGTTTCAGCCATTGAGGTCAGCCCAGACGGCAAACAATTTTCAATCACATCACCTGACCGTAGGATACGTGTGTTTTGGTTCAGAACAGGTAAACTAAGGCGAGTTTATGATGAGTCTCTGGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTGTACCGGTTGGAGGCCATTGATTTTGGCCGAAGAATGGCTGTCGAGAGGGAAATAGAGAAGACCGACGATGCTCCACTTCCGAATGCAGTTTTTGATGAAAGTTCCAATTTTATTATCTATGCAACCTTGCTTGGGATCAAAATTGTTAATATGCACACAAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAACAACGATAGGTTCTTAAGAATAGCTTTATATCAAGGTGACCGAAGTAGTAAAAAAGTAAGAAAGATCCCTGCTGCTGCTGCTAATGCCAATGAGAGTAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTCAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAACCAGAGGAGCCTGAAGATGCAACTAAGGGAAGAGACGTGTTCAACGAAAAGCCTCCTGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGGCAGCTACAACATCACTCCCGGACAATGTGATTTTACACACAACTATGGGTGATGTTCATATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAACTTTACAACTCATTGCCGGAATGGCTATTATGACAATCTTATTTTTCACCGGGTCATCAAAGGTTTCATGATACAAACAGGAGATCCTTTAGGAGATGGCACTGGTGGTCAATCTATTTGGGGGAGGGAATTTGAGGATGAATTTCATAAAAGTTTAAGGCATGATAGGCCTTTCACAGTTTCAATGGCAAACGCTGGCCAAAATACAAATGGCTCTCAGTTCTTTATCACCACTGTGGCTACTCCATGGTTGGACAACAAGCACACAGTATTTGGGAGAGTTGTGAAGGGAATGGATGTTGTTCAGGGCATAGAAAAGGTGAAGACAGACAAGACAGACAAGCCATACCAAGATGTAAAAATCCTAAACGTCACTGTACCGAAGTCTTGA 2064 0.4264 MAENENGAKAIEDEPVIGPGPAPRTRLKRPLQFEQAYLDTLPSANMYEKSYMHRDVVTHVAVSAADFFITGSIDGHLKFWKKRPIGIEFAKHFKAHLGPIEGLSVSGDGLLCSTISDDRSVKVYDVVNFDMMVMIRLPYIAGAVEWVYKQGDVKAMLAVSDRNSSFVHIYDVRAGSNDPIISKEIHLGPIKVMKYNPIYDSVISADVKGIIEYWSPATLQFPEDECGSDHFEHMFIHKILIILSWIHGDCPVQGLWAETFSCRDGGEILPRRRFVDGVGIPKQCTDCHPVYHLSPHRVSFKLKTDTNLFEIVKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEREIEKTDDAPLPNAVFDESSNFIIYATLLGIKIVNMHTNKVARILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKAATTSLPDNVILHTTMGDVHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGQNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKTDKPYQDVKILNVTVPKS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0180 687 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 530 684 IPR002130 GO:0000413|GO:0003755
Lal8g0180 687 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 568 585 IPR020892 GO:0003755|GO:0006457
Lal8g0180 687 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 547 562 IPR002130 GO:0000413|GO:0003755
Lal8g0180 687 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 573 585 IPR002130 GO:0000413|GO:0003755
Lal8g0180 687 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 616 631 IPR002130 GO:0000413|GO:0003755
Lal8g0180 687 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 631 643 IPR002130 GO:0000413|GO:0003755
Lal8g0180 687 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 644 659 IPR002130 GO:0000413|GO:0003755
Lal8g0180 687 SUPERFAMILY Cyclophilin-like 531 684 IPR029000 -
Lal8g0180 687 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 534 684 IPR002130 GO:0000413|GO:0003755
Lal8g0180 687 Gene3D - 35 136 IPR015943 GO:0005515
Lal8g0180 687 Pfam WD domain, G-beta repeat 91 125 IPR001680 GO:0005515
Lal8g0180 687 SMART WD40_4 86 125 IPR001680 GO:0005515
Lal8g0180 687 SMART WD40_4 44 81 IPR001680 GO:0005515
Lal8g0180 687 SMART WD40_4 176 215 IPR001680 GO:0005515
Lal8g0180 687 SMART WD40_4 304 343 IPR001680 GO:0005515
Lal8g0180 687 CDD cyclophilin_WD40 535 682 - -
Lal8g0180 687 MobiDBLite consensus disorder prediction 1 26 - -
Lal8g0180 687 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 685 IPR044666 -
Lal8g0180 687 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 5 685 - -
Lal8g0180 687 Gene3D - 140 384 IPR015943 GO:0005515
Lal8g0180 687 Gene3D - 515 685 IPR029000 -
Lal8g0180 687 SUPERFAMILY WD40 repeat-like 51 353 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0180 Lal-Chr8 1212029 1217872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0180 534 684 U-box Gene Family AT5G67530 46.358 1.86e-39 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0180 K12736 - gmx:100792207 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0180 8 1212029 1217872 Lal8g0180 8 1212029 1217872 ECH