Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0175 ATGGAGTTTTGGGGTACCGAGGTTAAGGTTGGTGAGGTTGTTAAGGTTGACCCAGAAGAAATTGAGGCCTATGTGCATCTTTCTCAGGCTGCACTTGGTGAGTCTAAGAAAGACAAAGCAAATGAACCTGCGGTTCTTTACTTGAAAGTTGGTGAACAGAAAATTGTTTTAGGAACTCTTTCCAGGGATAAAATCCCTCAGACAACTCTGGAAGTTGTTCTGGACAAGGAGTTTGAGCTTTCCCACAGTTCAAAGAGTTCTAGTGTCTTTTTCTGTGGATACAAGGCACTTATTCCTGATGAGGAAGAATATCCTTGA 318 0.4214 MEFWGTEVKVGEVVKVDPEEIEAYVHLSQAALGESKKDKANEPAVLYLKVGEQKIVLGTLSRDKIPQTTLEVVLDKEFELSHSSKSSSVFFCGYKALIPDEEEYP 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0175 105 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 96 - -
Lal8g0175 105 SUPERFAMILY Nucleoplasmin-like core domain 3 73 IPR036824 -
Lal8g0175 105 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Lal8g0175 105 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 96 - -
Lal8g0175 105 Gene3D Nucleoplasmin core domain 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0175 Lal-Chr8 1185457 1186467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0175 1 102 C2H2 Transcription Factor Family AT5G03740 50.980 1.54e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0175 - - lang:109358867 170.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0218 25 1500949 1503697 Lal8g0175 8 1185457 1186467 LSH
Lal10g1199 10 18423427 18426148 Lal8g0175 8 1185457 1186467 LSH
Lal8g0175 8 1185457 1186467 Lal2g0330 2 2004459 2007338 PCT
Lal2g0330 2 2004459 2007338 Lal8g0175 8 1185457 1186467 PCT