Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0172 ATGGCGAACAAGGTAACAGAGCATCAGTTATCCACCGTCCGATCCATCGTGGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTTCACATGGCCAAAAACGACGTCACCGCTGCCATCAATATCATTTTCGACACTCACACCCCAACCACCACCACCCCCAAATTCAAACCCAACAATAATCAAGAACGTGTTGAACACACAGAAATTTCTCCTTTAAAATCAACCACTAGCTCCAAACAAAACGACAATACAAAACGACACATAGAAATTTCCGATAATTGGTGGTTTGTTGGTTATGGCGAAATGATGGGACTTTCTACTTGTAAAGGGAGGAGTGTAAAGTATGGTGATCCAGTGTCTTTTAACTTTCCAATCAAGACTACCCTCTCTGTTTCCACGCCCACAGGTAAAGGCTTCGGCCGGAGCCGACACGCCGCGGCAAGTTGTTCTGAGATAGTTAGATTCTCCACACAACAATCTGGAGAGATAGGTAGAATACCAAATGAATGGGCTCGATGTCTCTTGCCTCTCGTGCGGGATAATAAGGTTAAGATTGAGGGGAATTGCAAATTTGCACCTAATGTTTTGGGCATCATGGACACCATTGTTTTGTCAGTCAGTGTATTCATCAATAGATCATTGTTTGGTCAGCATCACCAGGTTTCTCTCAAGGATGCTACCAATTCCACCGATGAATCAGTGTTTCATCCTCTTCCAATCTTGTTTCGGTTGCTAGGCCTAAACCCTTTTAAGAAGGCAGAGTTAACTCCTTCTGATTTTTATTCCAACAAGCGTCCTTTCGATCAAAAGGTTACATTACGAAACACCAAGCCTGAGCATCCTTCTCGAAATAATAATGAGAATGATAATGAGGACTCCATTTCTGAAATTGAGTTTGACAATATTGTTGGTGTTGGATCAAACTCAGAGTTAGAGGAAATGGATCCCCCAGGCAATCTTCTGTGTGAACTGCGACCTTATCAAAAGCAGGCTCTTCATTGGATGATCCAATTGGAGAAGGGAAGACCTACAGATGAGACGACAGAAACCCTTCATCCATGTTGGGAGGCATATCGCCTGGCTGACAAGAGAGAGCTTACTATTTATCTGAATGCATTTTCGGGTGACGCCACAATTAAGTTTCCCAGCACCCTTGAAATGGCCAAAGGAGGGATATTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCCTTGCCCATTCAGGAAGAGGTGGATCATTAGGCAGCCGAACCACAGTGCAGTCCTTTATTGAAGGTGGTGAAGCTAATGATACAGGGCACAAGTTTTCAGACATACCGAAGAAGACAACCAAATTTCCTGGTTTTGATAAATTGATGAAGCAAAACAATGCTCTAACAAGTGGTGGTAACTTGATAATATGTCCTATGACCCTTCTTGGGCAGTGGAAGACAGAGATTGAAACTCATGTGCAGCCTGGGTGTCTGTCTATATATGTCCATTACGGGCAAAGTAGGCCAAAAGATGCAAAAAGTCTAACTCAAAGTGATGTTGTAATTACTACATATGGAGTTTTATCCTCCGAATTTTCCAGTGAGAGTGCGGAGGATAATGGTGGACTTTTCTCAATTAGGTGGTTTCGGGTGGTTCTTGATGAGGCACACATTATAAAATCTTCTAAAAGCCAAAATAGCCTCGAGGATATTTTCAGTCTTCTTCGGTTTCTGAGAGTAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTCGAGGGTGGTGATGAGAGAGGGTTGAAGCTAGTTCAGTCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGTACAGATCGAGAGGGCAAGCCTATCCTAGTTCTTCCTCCAGCTGATATGCAGATAATCTACTGTGAACCAACAGAAGCTGAAAAGGACTTTTATGAGGCTCTATTCAAAAGATCCAAGGTCAAGTTTGAACAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGCTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAGTTTGCTGATCTGAACAAACTAGCCAAGCGCTTCCTTAGAGGAACCTATAATGCTTCAGACGGTGAAGTAAAAGATGCACCTTCATGTGCTTATGTTCAAGAAGTTGTCGAAGAGCTCCGTAAGGGGGAACAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACACCTTGTGCTCACCGTTTATGCCGGGAATGCTTATTGGCAAGTTGGCGAAACTCTACTTCTGGTTTATGTCCTGTTTGTAGGAAAACAATCAGCAGGCAGGATCTTATTACTGCCCCTACTGATAGTCGATTTAAGGTTGATATTGAAAAGAACTGGGTAGAGTCATGCAAGGTAACCATTCTGTTGCATGAACTTGAAAATCTTCGCTCATCAGGCTCCAAGAGCATTGTGTTCAGTCAGTGGACTGCGTTTCTAGACCTCTTGCAAATCCCCTTTACTAGGAATAACATTTCATATGTTCGTCTTGATGGGACTTTGAATCTGCAACAGCGGGAAAAAGTAATAAAACAATTCTCAGAAGACAGCAGCACCCTGGTGTTGTTGATGTCACTAAAAGCTGGTGGAGTGGGTATAAACCTAACAGCAGCTTCAAATGCTTTTGTCATGGACCCGTGGTGGAATCCGGCTGTTGAGGAACAGGCTGTTATGCGAATCCATCGCATTGGTCAAACAAAAAAGGTGGCCATCAAACGGTTTATTGTGAAGGGTACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAAAGAATGATTTCTGGCGCCTTGACCGATCAAGAAGTTCGTACAGCTCGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 2961 0.4336 MANKVTEHQLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHTPTTTTPKFKPNNNQERVEHTEISPLKSTTSSKQNDNTKRHIEISDNWWFVGYGEMMGLSTCKGRSVKYGDPVSFNFPIKTTLSVSTPTGKGFGRSRHAAASCSEIVRFSTQQSGEIGRIPNEWARCLLPLVRDNKVKIEGNCKFAPNVLGIMDTIVLSVSVFINRSLFGQHHQVSLKDATNSTDESVFHPLPILFRLLGLNPFKKAELTPSDFYSNKRPFDQKVTLRNTKPEHPSRNNNENDNEDSISEIEFDNIVGVGSNSELEEMDPPGNLLCELRPYQKQALHWMIQLEKGRPTDETTETLHPCWEAYRLADKRELTIYLNAFSGDATIKFPSTLEMAKGGILADAMGLGKTIMTISLLLAHSGRGGSLGSRTTVQSFIEGGEANDTGHKFSDIPKKTTKFPGFDKLMKQNNALTSGGNLIICPMTLLGQWKTEIETHVQPGCLSIYVHYGQSRPKDAKSLTQSDVVITTYGVLSSEFSSESAEDNGGLFSIRWFRVVLDEAHIIKSSKSQNSLEDIFSLLRFLRVEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQIIYCEPTEAEKDFYEALFKRSKVKFEQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYNASDGEVKDAPSCAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKTISRQDLITAPTDSRFKVDIEKNWVESCKVTILLHELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISYVRLDGTLNLQQREKVIKQFSEDSSTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0172 986 Pfam SNF2-related domain 329 563 IPR000330 GO:0005524|GO:0140658
Lal8g0172 986 CDD DEXDc_SHPRH-like 326 617 - -
Lal8g0172 986 MobiDBLite consensus disorder prediction 275 292 - -
Lal8g0172 986 SMART ring_2 751 790 IPR001841 -
Lal8g0172 986 SMART HIRAN_2 99 212 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lal8g0172 986 Gene3D - 383 629 IPR038718 -
Lal8g0172 986 SUPERFAMILY RING/U-box 740 797 - -
Lal8g0172 986 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 103 986 - -
Lal8g0172 986 CDD SF2_C_SNF 817 944 - -
Lal8g0172 986 SMART helicmild6 850 933 IPR001650 -
Lal8g0172 986 ProSiteProfiles Zinc finger RING-type profile. 751 791 IPR001841 -
Lal8g0172 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 975 IPR027417 -
Lal8g0172 986 Gene3D - 633 986 IPR027417 -
Lal8g0172 986 Pfam Zinc finger, C3HC4 type (RING finger) 748 796 - -
Lal8g0172 986 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 821 986 IPR001650 -
Lal8g0172 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 617 IPR027417 -
Lal8g0172 986 PANTHER DNA REPAIR PROTEIN RAD5 103 986 - -
Lal8g0172 986 MobiDBLite consensus disorder prediction 51 86 - -
Lal8g0172 986 Pfam Helicase conserved C-terminal domain 821 933 IPR001650 -
Lal8g0172 986 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 664 IPR014001 -
Lal8g0172 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 813 IPR013083 -
Lal8g0172 986 Pfam HIRAN domain 103 208 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lal8g0172 986 SMART ultradead3 322 630 IPR014001 -
Lal8g0172 986 MobiDBLite consensus disorder prediction 275 295 - -
Lal8g0172 986 CDD RING-HC 751 790 - -
Lal8g0172 986 ProSitePatterns Zinc finger RING-type signature. 766 775 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0172 Lal-Chr8 1164729 1173132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0172 1 986 RAD5 or RAD16-like Gene Family AT5G22750 68.147 0.0 1421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal8g0172 SNF2_N 4.1e-42 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0172 K15505 - gmx:100794558 1619.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0172 8 1164729 1173132 Lal8g0172 8 1164729 1173132 ECH