Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0165 ATGATTTCAAGGGCCACATCAAGCTTCAATCATCAAGAGTTTCAGATGTTTCCTTTGACTGAACATTTGGTTTCACAAAATGTTGAAGTTGATAACTCTGATGGTGGCTCAGGCTCTTCTTCTTCTTCACACTCTAGCTCCCTTCTCTTCTATCTCTCTATTCTCAAAGATAAGCTTAGTCAAGTGCAGACCCTGGTTGGTGTTATTCTCTCACCAGATCAGAGTTTACCCGAGTCAACATCCATGGCCATATCAAGCATGAACTCCACAATCCACGAAATCATAGTCACTGCCACTTCAATGATGTTGACTAGCCAAAAGATGATGGATCCTCCAGGTACTACTACCACTACTAATGATTGCACCAACGAATTGCACCATCAACAGATTGCTCAATCAAATTTTGGTAACAATAATAAAGCTGCGCTTAGTAACATAGACCCAAATAATAGAGAAATGTTAACAAGTGTCCTTAGCAGCACCCCAAATGAAAATATTAGATGTCAGGGTTTCTTTCCTAGTACCGAGTCTGAAGCCCTGGATTGGTTTGGTCAAAGCTATAACAACAATAGTATGAATAATATTAATAATTGCAACCTTAAGGATGAAGTTGCAATTAGTGAAAACAATAATGTGTCACCAGGAGATCATGAAAAAGATGAAAGCTATAATATTAATAGAGGGACTAATTCTTCAACAAAGAACTATGATGTAATTGAATTAGATGCTGATGATTTGTTGGCAAAGTACACACATCATTGCCAAGTTTGTGGTAAGGGGTTTAAGCGTGATGCAAATTTGAGGATGCATATGAGAGCTCATGGAGATGAATACAAGACTAGTGATGCATTGAAAAACTCATTGAAGAATAGAGGTACCTCATTGGGTAGTGTTAAGCCCATTAAATATTCATGTCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCATGCCAAGTTTCAACCATTGAAGTCTATGATTTGTGCAAAGAATCATTACAAAAGAACACACTGCCCCAAGATGTATGTTTGCAAGAGATGCAACCAGAAGCAGTTTTCTGTGCTTTCTGATTTAAGGACACATGAGAAGCACTGTGGGGACCTCAAGTGGCAGTGCTCATGTGGCACGACATTTTCTAGGAAAGACAAGCTTATGGGACATGTTGCTTTGTTCGTTGGGCACCAGCCAGCTACCAATATTGGCTTCTGA 1206 0.3947 MISRATSSFNHQEFQMFPLTEHLVSQNVEVDNSDGGSGSSSSSHSSSLLFYLSILKDKLSQVQTLVGVILSPDQSLPESTSMAISSMNSTIHEIIVTATSMMLTSQKMMDPPGTTTTTNDCTNELHHQQIAQSNFGNNNKAALSNIDPNNREMLTSVLSSTPNENIRCQGFFPSTESEALDWFGQSYNNNSMNNINNCNLKDEVAISENNNVSPGDHEKDESYNINRGTNSSTKNYDVIELDADDLLAKYTHHCQVCGKGFKRDANLRMHMRAHGDEYKTSDALKNSLKNRGTSLGSVKPIKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRTHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHQPATNIGF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0165 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 279 IPR013087 -
Lal8g0165 401 PANTHER OS08G0562300 PROTEIN 4 398 - -
Lal8g0165 401 Gene3D Classic Zinc Finger 339 389 - -
Lal8g0165 401 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Lal8g0165 401 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 4 398 IPR044300 GO:0010044|GO:0010447
Lal8g0165 401 Gene3D Classic Zinc Finger 228 302 - -
Lal8g0165 401 SMART c2h2final6 252 274 IPR013087 -
Lal8g0165 401 SMART c2h2final6 341 363 IPR013087 -
Lal8g0165 401 SMART c2h2final6 303 336 IPR013087 -
Lal8g0165 401 SUPERFAMILY beta-beta-alpha zinc fingers 250 277 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0165 Lal-Chr8 1125564 1126769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0165 45 396 C2H2 Transcription Factor Family AT5G22890 46.197 2.70e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal8g0165 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0165 - - gmx:100802769 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0165 8 1125564 1126769 Lal8g0165 8 1125564 1126769 ECH
Lal10g1217 10 18535324 18537187 Lal8g0165 8 1125564 1126769 LSH