Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0164 ATGGACCCAATGAATCTTCAACAAAACAATGTAGTGCACGTTAATGACTTTATCAATTTGATCCGTGGGGAAAATGAAGATCCCATCTATAACTTTGGTTCTGACCTTTTGAATGATTGCTTCATTGATAAACAATTCGTATCATTAGCTGGAAACTCAATATTTGATCAAAACAATAATGTTGTGAATGCCTACGATCCTAGCTCTACATTGAGCTCCTTCTCTTGTTTTGGTGGGAAGGTTAAGGGAGAAGGAGAAGGTGAAGGAGAAGAAGAAAATGATGGAATTTATTCTTCTTCTAAAACAACAACAACAACCACCACCACTGCTATTGCAGGCGATTCTTCCAAGGCCAAATCGAGGCCTAAAACAGATAGGTCCAAGACTCTCATCACTGAGAGGAGGAGGAGAGGCCAAATGAAGGAGAAGCTTTATGCATTACGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCAATCATTGGAGATGCAGTGGAGTATGTGCATAAGCTTCAAGCCCAAGCTAACAAGCTGAAGGCTGAGATTGCAGGACTTGAAACATCAACATTAGTGTACGAAAGCTATCAAGGTTCATCATCAATTGATAACCCCTTAAACATTCTAGTCACCAACGACATCCTTCCAATCAGCAAGATGATCATGCAGATTAACATGTATCAAGTGGAAGAAAAAGGATACCACGGAAAAATAGCTTGCAATAAAGGACAAGGAGTGGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTGCTGGTTTCAAAGTTCAGAATTCAAACTTGGTCACAGTTTGTGACAGTTTAATACTTACATTTACATTGAATGTAAAAGGTTCTGACCCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGTGCTCTTCTGAACCAAGGCTTTGAATTCATGGCATTTGCTCATGATGCTTAA 954 0.3973 MDPMNLQQNNVVHVNDFINLIRGENEDPIYNFGSDLLNDCFIDKQFVSLAGNSIFDQNNNVVNAYDPSSTLSSFSCFGGKVKGEGEGEGEEENDGIYSSSKTTTTTTTTAIAGDSSKAKSRPKTDRSKTLITERRRRGQMKEKLYALRSLVPNITKMDKASIIGDAVEYVHKLQAQANKLKAEIAGLETSTLVYESYQGSSSIDNPLNILVTNDILPISKMIMQINMYQVEEKGYHGKIACNKGQGVAASLYKALESLAGFKVQNSNLVTVCDSLILTFTLNVKGSDPEINLPNLKLWVTGALLNQGFEFMAFAHDA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0164 317 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 312 - -
Lal8g0164 317 MobiDBLite consensus disorder prediction 82 135 - -
Lal8g0164 317 MobiDBLite consensus disorder prediction 118 135 - -
Lal8g0164 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Lal8g0164 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 188 IPR036638 GO:0046983
Lal8g0164 317 Coils Coil 170 190 - -
Lal8g0164 317 MobiDBLite consensus disorder prediction 96 115 - -
Lal8g0164 317 Pfam Helix-loop-helix DNA-binding domain 130 174 IPR011598 GO:0046983
Lal8g0164 317 Gene3D - 114 190 IPR036638 GO:0046983
Lal8g0164 317 SMART finulus 130 179 IPR011598 GO:0046983
Lal8g0164 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0164 Lal-Chr8 1118169 1120736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0164 17 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 48.355 2.72e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal8g0164 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0164 - - gmx:100805451 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0164 8 1118169 1120736 Lal8g0164 8 1118169 1120736 ECH
Lal25g0205 25 1398236 1401337 Lal8g0164 8 1118169 1120736 LSH
Lal10g1219 10 18551461 18554262 Lal8g0164 8 1118169 1120736 LSH