Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0158 ATGGTATCTGACGCAAGTAAGAAGAAGGCTGCACAGAAGAAGGCTGCGGCGGCGGCCAAGAGAGGAGGCAAGGCGGCTGCAGCTTCATCCAAAGCGGCGCCGACACCTGATAAGATCGTCAATGGAATAGCTGATATTCAGATTTCAGATCGGAACTGCACCGGCGTTCTCTGCTCGCATCCCCTTTCTAGGGATATTCGGATAGAGTCTCTCTCAGTGACTTTTCACGGACATGATCTGATAGTTGATTCCGTATTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGGTTAAATGGTTGTGGAAAATCTACCCTGCTTACATCAATAGGTTACAGAGAGCTTCCCATTCCGGACCACATGGATATTTTTCACCTTTCTAGGGAAATTGAAGCCTCTGATATGTCTGCATTGGAGGCTGTCGTGAACTGTGATGAGGAAAGGTTGAAATTGGAGCAAGAAGCCGAAACTTTGGCTGCACAGGATGATGGGGGTGGTGAAGCTCTTGAACGAGTTTATGAACGGTTGGAGGCCATGGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAGATCTTATTTGGTCTTGGTTTTGACAAGCAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGAGGCTGGAGAATGAGGATTGCTTTAGCTCGAGCTCTATTTATGAAGCCAACCATTCTTCTTCTTGACGAGCCAACCAACCACCTTGATTTGGAAGCCTGTGTGTGGCTGGAGGAGAACTTGAAGAATTTTGACCGTATTCTGGTTGTGATCTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAGCAAAAAGCTGAAGCTCTACACTGGTAATTATGATCAGTATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTATAAATGGGAGCAGGAGCAGATTTCCTCAATGAAGGAATACATTGCCCGATTTGGCCACGGTTCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGTGGTGGACTTACAGAGAAGGTATCAAGGGACAGTGTCTTGGTATTCCGCTTTGTTGATGTGGGAAAGCTCCCCCCTCCTGTCCTCCAGTTTGTTGAGGTGTCATTTGGTTACACTCCTGAAAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTAGATTCTAGGGTTGCTCTGGTTGGACCTAATGGAGCCGGGAAGAGTACATTACTGAAGCTAATGACTGGTGATTTGGTTCCATCAGATGGCATGGTAAAGCGCCATAATCACCTTCGAATTGCACAATATCACCAGCACTTGACTGAAAAGCTGGACATGGAAATGTCTGCTCTCCTGTTTATGATGAGAGAATACCCTGGAAATGAGGAAGAAAAGATGAGAGCAGCAATTGGCAAGTTTGGGCTGACAGGTAAAGCGCAGGTGATGGCTATGAAGAATTTATCTGATGGGCAGAGAAGTCGTGTGGTATTCGCATGGTTAGCTTATAGACAGCCTCAGATGCTCCTATTGGATGAGCCAACTAATCATTTGGATATTGAGACAATCGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGGATGGTTCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTAGCCCATGAGATATGGGTCTGTGCTGATCAAAAAGTGACTAAATGGGATGGTGACATCATGGATTTCAAGAAGCATCTAAAGGCAAAGGCCGGTTTATCTGACTGA 1779 0.4547 MVSDASKKKAAQKKAAAAAKRGGKAAAASSKAAPTPDKIVNGIADIQISDRNCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSVLELNYGRRYGLLGLNGCGKSTLLTSIGYRELPIPDHMDIFHLSREIEASDMSALEAVVNCDEERLKLEQEAETLAAQDDGGGEALERVYERLEAMDAATAEKRAAEILFGLGFDKQMQAKKTRDFSGGWRMRIALARALFMKPTILLLDEPTNHLDLEACVWLEENLKNFDRILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVSRDSVLVFRFVDVGKLPPPVLQFVEVSFGYTPENLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLVPSDGMVKRHNHLRIAQYHQHLTEKLDMEMSALLFMMREYPGNEEEKMRAAIGKFGLTGKAQVMAMKNLSDGQRSRVVFAWLAYRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQKVTKWDGDIMDFKKHLKAKAGLSD 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0158 592 ProSitePatterns ABC transporters family signature. 210 224 IPR017871 GO:0005524
Lal8g0158 592 Gene3D - 343 590 IPR027417 -
Lal8g0158 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 66 306 IPR003439 GO:0005524
Lal8g0158 592 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 592 - -
Lal8g0158 592 Coils Coil 142 162 - -
Lal8g0158 592 Pfam ABC transporter 277 353 IPR032781 -
Lal8g0158 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 573 IPR027417 -
Lal8g0158 592 PANTHER - 1 592 - -
Lal8g0158 592 CDD ABCF_EF-3 377 569 - -
Lal8g0158 592 MobiDBLite consensus disorder prediction 1 31 - -
Lal8g0158 592 Gene3D - 65 330 IPR027417 -
Lal8g0158 592 SMART AAA_5 90 292 IPR003593 -
Lal8g0158 592 SMART AAA_5 402 590 IPR003593 -
Lal8g0158 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 313 IPR027417 -
Lal8g0158 592 CDD ABCF_EF-3 66 283 - -
Lal8g0158 592 Pfam ABC transporter 86 238 IPR003439 GO:0005524
Lal8g0158 592 Pfam ABC transporter 393 524 IPR003439 GO:0005524
Lal8g0158 592 Coils Coil 284 304 - -
Lal8g0158 592 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 377 592 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0158 Lal-Chr8 1077722 1082644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0158 377 572 Calmodulin-binding Proteins AT2G36910 26.432 1.02e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0158 K06185 - gmx:100809491 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0158 8 1077722 1082644 Lal8g0158 8 1077722 1082644 ECH
Lal10g1224 10 18574790 18579291 Lal8g0158 8 1077722 1082644 LSH