Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0149 ATGGTCATGCCAATGAAGGAAGCTGAAAAGAGCTTGGATCCTCAACTATGGCATGCATGTGCTGGTGGCATGGTTCAGATGCCACCAGTAAACTGCAAAGTGTTCTACTTTCCTCAAGGGCATGCTGAGCATGCACACACTAACCTTGATTTTGGAGCTTCCATGAGGATTCCACCACTTATTCTTTGCAGTGTTGCAGCAGTGAAGTTCTTTGCAGACCCTGAAACAGATGAGGTTTTTGCAAGGATAAGGTTGGTTCCTTTGAAAAACTCAGAGATTGATTATGATGATGATGGTGGTTGTGCTAAGGCCTCTGAGAATTCAGAAAAGCCTGCTTCTTTTGCCAAGACATTGACTCAATCTGATGCCAACAATGGTGGAGGGTTTTCAGTTCCTAGGTACTGTGCAGAAACCATCTTCCCAAAGCTGGATTACTCGGCCGAGCCGCCAGTTCAGACTGTGATCGCCAAGGATGTTCATGGTGAGGTTTGGAAGTTTAGGCACATCTATAGAGGCACACCGCGGCGCCACTTGCTTACAACTGGTTGGAGCAGTTTTGTAAATCAGAAGAAACTTGTCGCAGGTGATTCTGTTGTGTTTCTGAGGGCAGAAGATGGGGATCTTTGTATTGGAATTCGTAGAGCCAAGCGGGGAATTAATGGCGGATCAGAAACCCCATCAGGGTGGAGTACTGGTGCGGGGAGTTGTGGTATTGGACCTTATGGTGCATTTTCTGTTTTCTTGAGAGAGGAGAGCAAGATTTTCAGAAATGGTTGTGGGAACTCAAGCCCTGGTGACCGCGGTAATTTGAGTGGAAGTGCAAAAGTAAGTGCTGAATCTGTGAAGGAAGCTATGGCACTAGCTGCTACCAAACAACCATTTGAAATTGTTTATTACCCAAGAGCAAGCACACCGGAGTTTTGCATCAAGGCTTCGACAGTGAAGGTAGCTATGAGAATTCAATGGTGCTCTGGGATGAGGTTTAAGATGGCCTTTGAAACTGAGGATTCTTCCAGGATAAGCTGGTTCATGGGGACCATAGCTTCTGTTCAGGTCGTTGATCCTATTCGCTGGCCTAATTCACCTTGGCGACTTCTTCAGGTTACATGGGATGAGCCAGATTTGCTCCATAATGTGAAGCATGTAAGCCCATGGTTGGTTGAATTGGTATCAAACAATATACCAGTCATCCATCTCAAACCTTTCTCTCCACCAAGGAAGAAGCCTAGGTTTCCACCAAATCCAGACCTTCCCTACGATGTTCAGTTTCCAATACCAATGTTTTCGGGTAACCCCGCCGGGACTAGCAGCCCCTTGCGTTGTCTATCTGATAATGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATTTCCACCTTCGCAATAATAAACTCCAGTTTGGGGTGCTTCCAACTAACAGTCAGCAGCTCAATTTGCATGCTGCTGGAATTTCTAATGGCAACATAACAAAACATGATAAGAGCAAAGAAAGTTTGTCATGCTTGCTGACCATGGGAAATTCTCACAAGAGCTTGGAGAAATCTGATAACGTTAAGAGACACCAATTTTTACTTTTTGGTCAACCAATACTAACTGAGCAACAAATTTCCGGAAGAGCTTGTTCTAGTGATTTGTTGTCTCAGAATTATAGTACTGGGAACGATTCACAAGATGAGAATAAGGACAAAGGGAAGAGGCTTTTCAGTGACTCTCAATCTACACTTTTGCAGCAGTTTTCACCTGGAAAATCTTGTAGTACCGAGTCTTGGAAACTTGATTTGGATACCTCTGGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGAAGGACCCTAGACCTGTCAAGTCTTGGTTCTTATGAAGAACTGTACAGGAGACTGGCCAACATGTTTGGAATAGAAAGGTCTGAGATGTTGAGCCATGTACTCTACCGTGATGCAACTGGCGCTGTTAAGCAAATTGGAGAAAAACCCTTTAGTGATTTCATGAAGACAGCTAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAGATACTAAAAGGACTTGGATAACAGGAACTTGGAATGGAGAACATGGATTGGATGCATCAAACAAGACAGGTCATCTAAGCATATTTGCTTAA 2151 0.4421 MVMPMKEAEKSLDPQLWHACAGGMVQMPPVNCKVFYFPQGHAEHAHTNLDFGASMRIPPLILCSVAAVKFFADPETDEVFARIRLVPLKNSEIDYDDDGGCAKASENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAEDGDLCIGIRRAKRGINGGSETPSGWSTGAGSCGIGPYGAFSVFLREESKIFRNGCGNSSPGDRGNLSGSAKVSAESVKEAMALAATKQPFEIVYYPRASTPEFCIKASTVKVAMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKHVSPWLVELVSNNIPVIHLKPFSPPRKKPRFPPNPDLPYDVQFPIPMFSGNPAGTSSPLRCLSDNAPASIQGARHAQIGISLSDFHLRNNKLQFGVLPTNSQQLNLHAAGISNGNITKHDKSKESLSCLLTMGNSHKSLEKSDNVKRHQFLLFGQPILTEQQISGRACSSDLLSQNYSTGNDSQDENKDKGKRLFSDSQSTLLQQFSPGKSCSTESWKLDLDTSGHCKVFMESEDVGRTLDLSSLGSYEELYRRLANMFGIERSEMLSHVLYRDATGAVKQIGEKPFSDFMKTAKRLTILTDSGSKDTKRTWITGTWNGEHGLDASNKTGHLSIFA 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0149 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal8g0149 716 Gene3D - 112 216 IPR015300 -
Lal8g0149 716 ProSiteProfiles PB1 domain profile. 604 684 IPR000270 GO:0005515
Lal8g0149 716 CDD B3_DNA 113 214 IPR003340 GO:0003677
Lal8g0149 716 PANTHER AUXIN RESPONSE FACTOR 6 693 - -
Lal8g0149 716 Gene3D - 602 688 - -
Lal8g0149 716 Gene3D - 322 394 - -
Lal8g0149 716 SUPERFAMILY DNA-binding pseudobarrel domain 109 220 IPR015300 -
Lal8g0149 716 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal8g0149 716 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Lal8g0149 716 SMART B3_2 114 216 IPR003340 GO:0003677
Lal8g0149 716 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0149 Lal-Chr8 1013683 1017579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0149 1 686 B3 DNA Binding Superfamily AT4G30080 57.307 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal8g0149 B3 4.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0149 - - gmx:100778135 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0149 8 1013683 1017579 Lal8g0149 8 1013683 1017579 ECH
Lal8g0149 8 1013683 1017579 Lal10g1230 10 18631524 18635382 ECH
Lal13g1500 13 14608534 14611815 Lal8g0149 8 1013683 1017579 ECH
Lal24g0889 24 7272787 7276678 Lal8g0149 8 1013683 1017579 ECH
Lal10g1230 10 18631524 18635382 Lal8g0149 8 1013683 1017579 LSH
Lal8g0149 8 1013683 1017579 Lal9g0276 9 1721226 1725148 PCT
Lal9g0276 9 1721226 1725148 Lal8g0149 8 1013683 1017579 PCT