Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0137 ATGATGCCTGAAGAACTCTTTTCTCTTCCTTCCAACATGAGAAACACCTTTGATATTCAAGTTCATGACCCAAACTCAAGCCCTATTTCTAACCCTAGTTCAAATCAAGCTAAGAAAAAGAGAAATCCAGATGCAGAAGTAATTGCTCTTTCACCAAAGTCACTGGTGGCAACAAATAGGTTCATATGTGAAATATGCAAAAAGGGTTTTCAGAGAGACCAGAACCTTCAGCTGCACCGGAGAGGGCACAATCTGCCATGGAAGTTGAAGCAAAGAAACAAGCAAGAGGTTATAAAGAAGAAGGTGTACGTGTGTCCAGAGAAGAGTTGTGTGCACCATGACCCATGTAGAGCCTTGGGAGACCTCACTGGGATAAAGAAACACTTTAGCAGAAAGCATGGAGAGAAGAAGTGGAAGTGCAACAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAAAGAGTACAAATGTGAATGTGGCACCATTTTTTCAAGGAGGGACAGCTTCATAACTCATAGAGCTTTTTGTGGCGCCTTGGCTGAACAAAGTGCCAGAATTACTTCAGTTCCAGCAGTGTTTAACTTCAGAAACGATCATTTGATCAATACACAAGCACCAAGAAATCATCTTAGTTTACATGGGTTTCATCAAGAATGTGGTGTATCAGGAACAGAACCATTAATGGAAAATTTTATGGATGCAGAACATGGACAGAAGCTGAGGCTGCCATTATGGCTAGACCAGGCCAATTCTAATGCAAATGATGTAGTCCAAACAATGAACAGGAACATGTTTGGATCATCTCAACAGGCACAGTTTCTGAATTACAGGTACCCAGAACCCGAAGCATCATTTACAAGTGGCAATTTTTTATCTTTGCCTGCTGCAATGTCACAAGGGCTGAAACAAAAACAAGAAGAAAACAAAGTAAACTTGTCTCATAGCTTGAGTTCTATGCACTCTAGTCATCAGAACTTACAAGGTGGCCCGACTCACATTTCTACAAGGATCAATGATAATACAACCTTCAATAGCTCTAACAATCTCTTTGGCATGAACAGTAATATTGTTGAAATGCAGACAATTTTGAAGCACGGAAATCAACAAACTGGAAACTACAACAATATGGTGGTGAGTTCATTAAATGATGCGAATAATTGTAGTTCATTTGGGAATTTGGATCATATAGTAATGCCGGTGGATGAAGAGCAACTGGGATTAACTAGAGATTTTCTGGGCGTTGGAGATGAAACATTAAGAACACCATTCTTGCACCAAGACCTTGATAAGTTCAACCCTATAGAATCGGTTTTGAACTTGCAAAGCCAGTTCGGTGGGCATCACAATATGATGAAATAG 1389 0.4024 MMPEELFSLPSNMRNTFDIQVHDPNSSPISNPSSNQAKKKRNPDAEVIALSPKSLVATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLKQRNKQEVIKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCNKCSKKYAVQSDWKAHSKICGTKEYKCECGTIFSRRDSFITHRAFCGALAEQSARITSVPAVFNFRNDHLINTQAPRNHLSLHGFHQECGVSGTEPLMENFMDAEHGQKLRLPLWLDQANSNANDVVQTMNRNMFGSSQQAQFLNYRYPEPEASFTSGNFLSLPAAMSQGLKQKQEENKVNLSHSLSSMHSSHQNLQGGPTHISTRINDNTTFNSSNNLFGMNSNIVEMQTILKHGNQQTGNYNNMVVSSLNDANNCSSFGNLDHIVMPVDEEQLGLTRDFLGVGDETLRTPFLHQDLDKFNPIESVLNLQSQFGGHHNMMK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0137 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 426 - -
Lal8g0137 462 SMART c2h2final6 138 158 IPR013087 -
Lal8g0137 462 SMART c2h2final6 103 133 IPR013087 -
Lal8g0137 462 SMART c2h2final6 61 83 IPR013087 -
Lal8g0137 462 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lal8g0137 462 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 25 426 - -
Lal8g0137 462 MobiDBLite consensus disorder prediction 17 38 - -
Lal8g0137 462 Gene3D Classic Zinc Finger 116 195 - -
Lal8g0137 462 SUPERFAMILY beta-beta-alpha zinc fingers 60 158 IPR036236 -
Lal8g0137 462 MobiDBLite consensus disorder prediction 17 44 - -
Lal8g0137 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0137 Lal-Chr8 941929 944189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0137 37 210 IDZ Gene Family AT3G45260 78.333 1.78e-102 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal8g0137 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0137 K25870 - gmx:100817691 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0137 8 941929 944189 Lal8g0137 8 941929 944189 ECH
Lal10g1237 10 18674067 18676146 Lal8g0137 8 941929 944189 LSH
Lal8g0137 8 941929 944189 Lal1g0374 1 2265403 2267176 PCT
Lal8g0137 8 941929 944189 Lal9g0264 9 1641314 1643146 PCT
Lal1g0374 1 2265403 2267176 Lal8g0137 8 941929 944189 PCT
Lal9g0264 9 1641314 1643146 Lal8g0137 8 941929 944189 PCT