LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0127	ATGTTGAATTTTAATTTGAATGCTGATTCAACTGAGAATGATGACTCACTCGAGCTGTTGGAAAGGTTTCCAGAAGCTTCTTCTGGAACCTCGAATTCATCAATCGTGAATGCGGACGGTTCTAGCAACGGAGGAGGTGACGTGGACTCGTGCTCCACACGCGCCGGCGGAGGGAGTGGCGTTTTCACCTTCGATTTCAGTATCACGAAGGTGGAAGACATGAACAACGTTGTGACGCCGACGAAGGAGCTGTTTCCGATGAGTTCTGGAAATTGGAAGATGCAACAACCGTCAACGTCGTCGTTGTTTCCTGCGAGGAAGAGTGGCGTGAATCTCTCGTTAGATAATGGCGAAAACAGTGGGACGATGAAGATGGTTCAGGCTCAGAGACAAATGCCTCAACAACCGGTGAAGAAGAGTAGGAGAGGACCAAGGTCTCGGAGTTCACAGTACAGAGGAGTAACTTTCTATAGAAGGACCGGTCGTTGGGAATCACATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGATACCGCTGATGCTGCTGCTAGGGCCTATGATCGAGCTGCTATCAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTCATAGATTATGATGATGATCTTAAACAGCTGAAAAATCTCTCCAAAGAGGAATTTGTGCACATACTACGTCGCCAAAGCACTGGTTTCTCAAGGGGGATCTCCAAATACAGAGGAGTGACACTCCATAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGCCTATTCGACAACGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGGGAGGCAGTCACCAACTTTGAGCTAAGTACATATGAGAGCGACATGAAATCTGAAGCCATTAATGAAGGTGGCAGTCACAATCTAGACCTCAATTTGGGCATAGCAACCCCTGGACATGGACCCAAAGAAAACAAGGGGCATCTTCAGTTCCAGCCCTTTCCTTACAACATGCATCCCGGAAGAAGTTCAAGGATGGAGACTAATGTTAATTCAGTTAATGGTGACCCATCTTTGAAAAGGCTGGTGGTAACTGAAGAGCGTCCTTTTGTTTGGAATGCCCCATATTCTAGTTTTTTCCCTAATGAGGAAAGAGCAGAAAGAATCGTTCCACATCCTTCTCAAGGGCTACCCAACTGGGCGTGGCAAACGCAGGGTCAGGTCACTGCTACCCCAGTGACACAGTTCTCTACAGCAGCATCATCAGGATTCTCACTTTCAACACCCTTTCCACCAACTGCCATATTTCCAACAAAATCTATGAAGCCACTTCCCCAGAGTCTCTGTTTCACTTCATCCAACGCACCTCCTAGTAATGCACCTCAATATTATTACCAGGTCAAATCCCCAGAGGCACCAACTTAG	1458	0.4636	MLNFNLNADSTENDDSLELLERFPEASSGTSNSSIVNADGSSNGGGDVDSCSTRAGGGSGVFTFDFSITKVEDMNNVVTPTKELFPMSSGNWKMQQPSTSSLFPARKSGVNLSLDNGENSGTMKMVQAQRQMPQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTADAAARAYDRAAIKFRGVDADINFNLIDYDDDLKQLKNLSKEEFVHILRRQSTGFSRGISKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDNEVEAARAYDKAAIKCNGREAVTNFELSTYESDMKSEAINEGGSHNLDLNLGIATPGHGPKENKGHLQFQPFPYNMHPGRSSRMETNVNSVNGDPSLKRLVVTEERPFVWNAPYSSFFPNEERAERIVPHPSQGLPNWAWQTQGQVTATPVTQFSTAASSGFSLSTPFPPTAIFPTKSMKPLPQSLCFTSSNAPPSNAPQYYYQVKSPEAPT	485

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal8g0127	485	MobiDBLite	consensus disorder prediction	25	49	-	-
Lal8g0127	485	SUPERFAMILY	DNA-binding domain	241	301	IPR016177	GO:0003677
Lal8g0127	485	Gene3D	AP2/ERF domain	241	301	IPR036955	GO:0003700\|GO:0006355
Lal8g0127	485	Gene3D	AP2/ERF domain	149	207	IPR036955	GO:0003700\|GO:0006355
Lal8g0127	485	Pfam	AP2 domain	241	291	IPR001471	GO:0003700\|GO:0006355
Lal8g0127	485	Pfam	AP2 domain	150	198	IPR001471	GO:0003700\|GO:0006355
Lal8g0127	485	ProSiteProfiles	AP2/ERF domain profile.	150	206	IPR001471	GO:0003700\|GO:0006355
Lal8g0127	485	PRINTS	Ethylene responsive element binding protein signature	243	254	IPR001471	GO:0003700\|GO:0006355
Lal8g0127	485	PRINTS	Ethylene responsive element binding protein signature	281	301	IPR001471	GO:0003700\|GO:0006355
Lal8g0127	485	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	451	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0127	Lal-Chr8	873613	878098	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal8g0127	65	325	AP2-EREBP Transcription Factor Family	AT4G36920	66.791	5.54e-99	303

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Lal8g0127		AP2	9.4e-09	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal8g0127	K09284		-	gmx:100777102	704.131

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lal8g0127	8	873613	878098	Lal8g0127	8	873613	878098	ECH
Lal25g0165	25	1061545	1065365	Lal8g0127	8	873613	878098	LSH
Lal8g0127	8	873613	878098	Lal9g0249	9	1543291	1547233	PCT
Lal9g0249	9	1543291	1547233	Lal8g0127	8	873613	878098	PCT

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