Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0127 ATGTTGAATTTTAATTTGAATGCTGATTCAACTGAGAATGATGACTCACTCGAGCTGTTGGAAAGGTTTCCAGAAGCTTCTTCTGGAACCTCGAATTCATCAATCGTGAATGCGGACGGTTCTAGCAACGGAGGAGGTGACGTGGACTCGTGCTCCACACGCGCCGGCGGAGGGAGTGGCGTTTTCACCTTCGATTTCAGTATCACGAAGGTGGAAGACATGAACAACGTTGTGACGCCGACGAAGGAGCTGTTTCCGATGAGTTCTGGAAATTGGAAGATGCAACAACCGTCAACGTCGTCGTTGTTTCCTGCGAGGAAGAGTGGCGTGAATCTCTCGTTAGATAATGGCGAAAACAGTGGGACGATGAAGATGGTTCAGGCTCAGAGACAAATGCCTCAACAACCGGTGAAGAAGAGTAGGAGAGGACCAAGGTCTCGGAGTTCACAGTACAGAGGAGTAACTTTCTATAGAAGGACCGGTCGTTGGGAATCACATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGATACCGCTGATGCTGCTGCTAGGGCCTATGATCGAGCTGCTATCAAGTTCAGGGGAGTTGATGCTGATATCAATTTCAATCTCATAGATTATGATGATGATCTTAAACAGCTGAAAAATCTCTCCAAAGAGGAATTTGTGCACATACTACGTCGCCAAAGCACTGGTTTCTCAAGGGGGATCTCCAAATACAGAGGAGTGACACTCCATAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGCCTATTCGACAACGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGGGAGGCAGTCACCAACTTTGAGCTAAGTACATATGAGAGCGACATGAAATCTGAAGCCATTAATGAAGGTGGCAGTCACAATCTAGACCTCAATTTGGGCATAGCAACCCCTGGACATGGACCCAAAGAAAACAAGGGGCATCTTCAGTTCCAGCCCTTTCCTTACAACATGCATCCCGGAAGAAGTTCAAGGATGGAGACTAATGTTAATTCAGTTAATGGTGACCCATCTTTGAAAAGGCTGGTGGTAACTGAAGAGCGTCCTTTTGTTTGGAATGCCCCATATTCTAGTTTTTTCCCTAATGAGGAAAGAGCAGAAAGAATCGTTCCACATCCTTCTCAAGGGCTACCCAACTGGGCGTGGCAAACGCAGGGTCAGGTCACTGCTACCCCAGTGACACAGTTCTCTACAGCAGCATCATCAGGATTCTCACTTTCAACACCCTTTCCACCAACTGCCATATTTCCAACAAAATCTATGAAGCCACTTCCCCAGAGTCTCTGTTTCACTTCATCCAACGCACCTCCTAGTAATGCACCTCAATATTATTACCAGGTCAAATCCCCAGAGGCACCAACTTAG 1458 0.4636 MLNFNLNADSTENDDSLELLERFPEASSGTSNSSIVNADGSSNGGGDVDSCSTRAGGGSGVFTFDFSITKVEDMNNVVTPTKELFPMSSGNWKMQQPSTSSLFPARKSGVNLSLDNGENSGTMKMVQAQRQMPQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTADAAARAYDRAAIKFRGVDADINFNLIDYDDDLKQLKNLSKEEFVHILRRQSTGFSRGISKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDNEVEAARAYDKAAIKCNGREAVTNFELSTYESDMKSEAINEGGSHNLDLNLGIATPGHGPKENKGHLQFQPFPYNMHPGRSSRMETNVNSVNGDPSLKRLVVTEERPFVWNAPYSSFFPNEERAERIVPHPSQGLPNWAWQTQGQVTATPVTQFSTAASSGFSLSTPFPPTAIFPTKSMKPLPQSLCFTSSNAPPSNAPQYYYQVKSPEAPT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0127 485 MobiDBLite consensus disorder prediction 25 49 - -
Lal8g0127 485 SUPERFAMILY DNA-binding domain 241 301 IPR016177 GO:0003677
Lal8g0127 485 Gene3D AP2/ERF domain 241 301 IPR036955 GO:0003700|GO:0006355
Lal8g0127 485 Gene3D AP2/ERF domain 149 207 IPR036955 GO:0003700|GO:0006355
Lal8g0127 485 Pfam AP2 domain 241 291 IPR001471 GO:0003700|GO:0006355
Lal8g0127 485 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Lal8g0127 485 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Lal8g0127 485 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Lal8g0127 485 PRINTS Ethylene responsive element binding protein signature 281 301 IPR001471 GO:0003700|GO:0006355
Lal8g0127 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 451 - -
Lal8g0127 485 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Lal8g0127 485 MobiDBLite consensus disorder prediction 127 151 - -
Lal8g0127 485 SUPERFAMILY DNA-binding domain 149 206 IPR016177 GO:0003677
Lal8g0127 485 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Lal8g0127 485 MobiDBLite consensus disorder prediction 24 54 - -
Lal8g0127 485 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 451 - -
Lal8g0127 485 CDD AP2 150 205 IPR001471 GO:0003700|GO:0006355
Lal8g0127 485 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Lal8g0127 485 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0127 Lal-Chr8 873613 878098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0127 65 325 AP2-EREBP Transcription Factor Family AT4G36920 66.791 5.54e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal8g0127 AP2 9.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0127 K09284 - gmx:100777102 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0127 8 873613 878098 Lal8g0127 8 873613 878098 ECH
Lal25g0165 25 1061545 1065365 Lal8g0127 8 873613 878098 LSH
Lal8g0127 8 873613 878098 Lal9g0249 9 1543291 1547233 PCT
Lal9g0249 9 1543291 1547233 Lal8g0127 8 873613 878098 PCT