LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal8g0117	ATGGCTCCACTCAAAGTTGATAAGAAGACTGATCCAAAGACCCAGGCTTTGAAAACCGCCAAAGCAGTCAAGTCTGGCCCTACCTTTAAGAAGAAGGCCAAGAAGATCCGAACATCTGTCACCTTCCATCGGCCAAAGACTTTGACAAAGGATAGGAATCCTAAGTACCCTCGCATTAGTGCTACACCAAGGAACAAGCTTGATCATTATCAGATTTTGAAATTCCCTCTCACAACTGAGTCTGCGATGAAGAAGATTGAAGACAACAACACTCTAGTTTTTATTGTTGACATACGTGCTGACAAGAAGAAGATCAAAGATGCCGTGAAGAAAATGTATGACATCCAAGCCAAGAAAGTTAACACCTTAATCAGGCCTGATGGCACCAAGAAGGCCTATGTTAGGTTGACACCTGATTATGATGCCTTGGATGTAGCTAACAAGATTGGAATTATATAA	459	0.4183	MAPLKVDKKTDPKTQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLTKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	152

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal8g0117	152	PANTHER	60S RIBOSOMAL PROTEIN L23A	1	152	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Lal8g0117	152	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	69	145	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Lal8g0117	152	MobiDBLite	consensus disorder prediction	1	15	-	-
	Lal8g0117	152	ProSitePatterns	Ribosomal protein L23 signature.	130	145	IPR001014	-
	Lal8g0117	152	Gene3D	-	33	152	IPR012677	-
	Lal8g0117	152	Hamap	50S ribosomal protein L23 [rplW].	72	152	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Lal8g0117	152	Pfam	Ribosomal protein L23	72	134	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Lal8g0117	152	MobiDBLite	consensus disorder prediction	25	41	-	-
	Lal8g0117	152	Pfam	Ribosomal protein L23, N-terminal domain	13	61	IPR005633	-
	Lal8g0117	152	PANTHER	60S RIBOSOMAL PROTEIN L23A-2	1	152	-	-
	Lal8g0117	152	TIGRFAM	uL23_arch: ribosomal protein uL23	76	152	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Lal8g0117	152	MobiDBLite	consensus disorder prediction	1	61	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal8g0117	Lal-Chr8	801887	804059	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal8g0117	25	152	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	92.188	2.54e-69	204

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal8g0117	K02893		-	gmx:100779362	277.33

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal8g0117	8	801887	804059	Lal8g0117	8	801887	804059	ECH
	Lal8g0117	8	801887	804059	Lal1g0344	1	2052427	2054260	PCT
	Lal8g0117	8	801887	804059	Lal2g0250	2	1464995	1466436	PCT
	Lal1g0344	1	2052427	2054260	Lal8g0117	8	801887	804059	PCT
	Lal2g0250	2	1464995	1466436	Lal8g0117	8	801887	804059	PCT