Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0115 ATGGATAATTGTTTGATGCTAATAACCAAAGTTGGTGAAATTAGTGACATCAACCAAAAAAAAGATGAGAAAGAGTTATTAACTAATAAGGATGGTGGTTTTAAGTGCAAGACATGCAATAAGAGATTCTCTTCTTTTCAAGCACTTGGAGGCCACAGAGCTAGTCACAAGAAGCAAAAGCTCATGCTAAATGACATTTCTTGTCATCATAATCATGAATCACTAAAAAGGACTATGAAATCAAAGATGCACCCATGCCCTATTTGTGGGGTTGGGTTTAGGATTGGACAGGCTCTTGGAGGGCACATGAGAAAGCATAGAGCTGCAATTAATCATGGTTTGTTGATTCATAACCATGATAACTTGTGGTTGAAGAAATCTAATTTGTGCCTGGACTTGAACTTGGCGCCACCAGAGAATGATATTAAGCTAAGGGCACCTGTTTGA 447 0.3826 MDNCLMLITKVGEISDINQKKDEKELLTNKDGGFKCKTCNKRFSSFQALGGHRASHKKQKLMLNDISCHHNHESLKRTMKSKMHPCPICGVGFRIGQALGGHMRKHRAAINHGLLIHNHDNLWLKKSNLCLDLNLAPPENDIKLRAPV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0115 148 SMART c2h2final6 84 106 IPR013087 -
Lal8g0115 148 SMART c2h2final6 34 56 IPR013087 -
Lal8g0115 148 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Lal8g0115 148 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Lal8g0115 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Lal8g0115 148 SUPERFAMILY beta-beta-alpha zinc fingers 34 106 IPR036236 -
Lal8g0115 148 Pfam C2H2-type zinc finger 84 108 - -
Lal8g0115 148 Pfam C2H2-type zinc finger 34 59 - -
Lal8g0115 148 Gene3D Classic Zinc Finger 8 111 - -
Lal8g0115 148 PANTHER ZINC FINGER PROTEIN ZAT5 1 140 - -
Lal8g0115 148 PANTHER OS03G0279700 PROTEIN 1 140 - -
Lal8g0115 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0115 Lal-Chr8 797939 798385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0115 4 134 C2H2 Transcription Factor Family AT3G46080 44.056 8.09e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal8g0115 zf-C2H2_6 1.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0115 - - lang:109358309 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0115 8 797939 798385 Lal8g0115 8 797939 798385 ECH